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Run PyNWB tests

Update run_pynwb_tests.yml #2435

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Update run_pynwb_tests.yml

Update run_pynwb_tests.yml #2435

Workflow file for this run

.github/workflows/run_pynwb_tests.yml at e481301
name: Run PyNWB tests
on:
pull_request:
schedule:
- cron: '0 5 * * *' # once per day at midnight ET
workflow_dispatch:
jobs:
run-pynwb-tests:
runs-on: ubuntu-latest
concurrency:
group: ${{ github.workflow }}-${{ github.ref }}
cancel-in-progress: true
steps:
- name: Set up Python
uses: actions/setup-python@v5
with:
python-version: '3.12'
- name: Update pip
run: python -m pip install --upgrade pip
- name: Clone PyNWB and install dev branch of HDMF
run: |
python -m pip list
git clone https://github.com/NeurodataWithoutBorders/pynwb.git --recurse-submodules
cd pynwb
python -m pip install -r requirements-dev.txt # do not install the pinned install requirements
python -m pip install . # this will install a different version of hdmf from the current one
python -m pip list
- name: Checkout repo with submodules
uses: actions/checkout@v4
with:
submodules: 'recursive'
fetch-depth: 0 # tags are required to determine the version
# - name: Set up Python
# uses: actions/setup-python@v5
# with:
# python-version: '3.12'
# - name: Update pip
# run: python -m pip install --upgrade pip
# - name: Clone PyNWB and install dev branch of HDMF
# run: |
# python -m pip list
# git clone https://github.com/NeurodataWithoutBorders/pynwb.git --recurse-submodules
# cd pynwb
# python -m pip install -r requirements-dev.txt # do not install the pinned install requirements
# python -m pip install . # this will install a different version of hdmf from the current one
# cd ..
# python -m pip uninstall -y hdmf # uninstall the other version of hdmf
# python -m pip install . # reinstall current branch of hdmf
# python -m pip list
- name: Run PyNWB tests on PyNWB dev branch
run: |
ls
pip list
python test.py -v