The pipelines used for RNA-seq data analysis:

[1] GSE181889: Quantitative Analysis of CXCL4 and TLR8 signaling crosstalk in human primary monocytes by RNA-Seq (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE181889).

[2] GSE191054: Transcriptomic data on the response of macropohages to monosodium urate crystals (MSUc) (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE191054).

[3] GSE101409: Subcellular profiling of macrophage long non-coding RNAs (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE101409).

[4] GSE154345: Identification of pharmacologic inhibitors and activators of IL-4-induced macrophage polarization [PBMC RNA-seq] (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE154345).

[5] GSE154346: Identification of pharmacologic inhibitors and activators of IL-4-induced macrophage polarization [THP-1 RNA-seq] (https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?acc=GSE154346).