ovarian tissue svs in data module

histolab · Sep 9, 2020 · f53270e · f53270e
1 parent 86732e3
commit f53270e
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diff --git a/src/histolab/data/__init__.py b/src/histolab/data/__init__.py
@@ -379,6 +379,27 @@ def heart_tissue() -> Tuple[openslide.OpenSlide, str]:  # pragma: no cover
     return _load_svs("aperio/JP2K-33003-2.svs")
 
 
+def ovarian_tissue() -> Tuple[openslide.OpenSlide, str]:  # pragma: no cover
+    """Ovarian tissue, TCGA-OV dataset.
+
+    This image is available here
+    https://portal.gdc.cancer.gov/cases/b777ec99-2811-4aa4-9568-13f68e380c86
+    or through the API
+    https://api.gdc.cancer.gov/data/b777ec99-2811-4aa4-9568-13f68e380c86
+
+
+    Access: open
+
+    Returns
+    -------
+    prostate_tissue : openslide.OpenSlide
+        Ovarian tissue Whole-Slide-Image
+    path : str
+        Path where the slide is saved
+    """
+    return _load_svs("tcga/ovarian/b777ec99-2811-4aa4-9568-13f68e380c86")
+
+
 def prostate_tissue() -> Tuple[openslide.OpenSlide, str]:  # pragma: no cover
     """Prostate tissue, TCGA-PRAD dataset.
 

diff --git a/src/histolab/data/_registry.py b/src/histolab/data/_registry.py
@@ -15,6 +15,7 @@
     "tcga/breast/f8b4cee6-9149-45b4-ae53-82b0547e1e34": "55c694262c4d44b342e08eb3ef2082eeb9e9deeb3cb445e4776419bb9fa7dc21",
     "tcga/breast/31e248bf-ee24-4d18-bccb-47046fccb461": "95163831d9076bb5e5b21790933dee9535a3607ba35bd6ae425374a45ecb1ba6",
     "tcga/prostate/6b725022-f1d5-4672-8c6c-de8140345210": "305c80e28227b25fdd0cc24726da4cf038380b4326e25c6518ffe23051a25ac0",
+    "tcga/ovarian/b777ec99-2811-4aa4-9568-13f68e380c86": "f8e5059a0c9f8c026cfb2613cddef6562f8cdbd5954580282e2afa41d2f86a8c",
 }
 
 aperio_repo_url = "http://openslide.cs.cmu.edu/download/openslide-testdata/Aperio"
@@ -28,6 +29,7 @@
     "tcga/breast/f8b4cee6-9149-45b4-ae53-82b0547e1e34": f"{tcga_repo_url}/f8b4cee6-9149-45b4-ae53-82b0547e1e34",
     "tcga/breast/31e248bf-ee24-4d18-bccb-47046fccb461": f"{tcga_repo_url}/31e248bf-ee24-4d18-bccb-47046fccb461",
     "tcga/prostate/6b725022-f1d5-4672-8c6c-de8140345210": f"{tcga_repo_url}/6b725022-f1d5-4672-8c6c-de8140345210",
+    "tcga/ovarian/b777ec99-2811-4aa4-9568-13f68e380c86": f"{tcga_repo_url}/b777ec99-2811-4aa4-9568-13f68e380c86",
 }
 
 legacy_registry = {