1d rod update pt 2 #820
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name: Linter | |
on: | |
pull_request: | |
push: | |
branches: ["master", "main"] | |
jobs: | |
flake8: | |
runs-on: ubuntu-latest | |
steps: | |
- uses: actions/checkout@v3 | |
- name: Set up Python 3.7 | |
uses: actions/setup-python@v2 | |
with: | |
python-version: 3.7 | |
- name: Install dependencies | |
run: | | |
python -m pip install --upgrade pip | |
pip install flake8 | |
- name: Run flake8 for critical errors | |
run: | | |
# Fail the build for the following critical errors: | |
# E9** syntax, io, or indentation error | |
# F63* syntax error in assertion, comparison, or print | |
# F7** syntax error in loops or functions | |
# F82* undefined variables | |
# Currently still excluding some files in Informatics that import from rdkit! | |
flake8 molSimplify --count --select=E9,F63,F7,F82 --show-source --statistics --exclude=fragment_classes.py,frag_functionalizer.py,bridge_functionalizer.py | |
- name: Run full flake8 linter | |
run: | | |
# Will never fail the build because of the --exit-zero flag but gives a report of the "code quality" | |
flake8 molSimplify --count --statistics --max-complexity 15 --max-line-length=127 --exit-zero | |
- name: Report Status | |
# Slack notifications only on the main repo | |
if: ${{ github.event_name != 'pull_request' && github.repository == 'hjkgrp/molSimplify' && job.status == 'failure'}} | |
#uses: ravsamhq/notify-slack-action@v1 | |
uses: 8398a7/action-slack@v3 | |
with: | |
fields: message,commit,author,workflow,job,took | |
status: ${{ job.status }} | |
env: | |
SLACK_WEBHOOK_URL: ${{secrets.SLACK_WEBHOOK}} | |
MATRIX_CONTEXT: ${{ toJson(matrix) }} # required | |
mypy: | |
runs-on: ubuntu-latest | |
steps: | |
- uses: actions/checkout@v3 | |
- name: Set up Python 3.7 | |
uses: actions/setup-python@v2 | |
with: | |
python-version: 3.7 | |
- name: Install dependencies | |
run: | | |
python -m pip install --upgrade pip | |
pip install mypy types-setuptools types-PyYAML types-requests types-tensorflow types-beautifulsoup4 pandas-stubs PyQt5-stubs | |
- name: Typecheck with mypy | |
run: | | |
mypy --ignore-missing-imports molSimplify | |
- name: Report Status | |
# Slack notifications only on the main repo | |
if: ${{ github.event_name != 'pull_request' && github.repository == 'hjkgrp/molSimplify' && job.status == 'failure'}} | |
#uses: ravsamhq/notify-slack-action@v1 | |
uses: 8398a7/action-slack@v3 | |
with: | |
fields: message,commit,author,workflow,job,took | |
status: ${{ job.status }} | |
env: | |
SLACK_WEBHOOK_URL: ${{secrets.SLACK_WEBHOOK}} | |
MATRIX_CONTEXT: ${{ toJson(matrix) }} # required |