release version 2.3.0

hklarner · Jan 15, 2021 · 4447eba · 4447eba
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Showing 8 changed files with 24 additions and 23 deletions.
diff --git a/PyBoolNet/__init__.py b/PyBoolNet/__init__.py
@@ -24,7 +24,7 @@
 
 
 def version() -> str:
-    return "2.2.9"
+    return "2.3.0"
 
 
 def pprint(x):

diff --git a/README.md b/README.md
@@ -32,13 +32,18 @@ pip3 install git+https://github.com/hklarner/PyBoolNet
 To install a tagged version use the `@`: 
 
 ```bash 
-pip3 install git+https://github.com/hklarner/PyBoolNet@2.2.9
+pip3 install git+https://github.com/hklarner/PyBoolNet@2.3.0
 ```
 
 For release notes, see
 
  * [PyBoolNet/RELEASENOTES.md](https://github.com/hklarner/PyBoolNet/blob/master/RELEASENOTES.md)
 
 
+## Contributions
+- send pull requests to the `develop` branch
+- add tests to `PyBoolNet/tests/` (the other location, `PyBoolNet/PyBoolNet/Tests/` is deprecated)
+
+
 ## Contributions
 If you want to contribute code to PyBoolNet, please send pull requests to the `develop` branch.
diff --git a/RELEASENOTES.md b/RELEASENOTES.md
@@ -1,5 +1,8 @@
 
-## release notes for next version
+## release notes for version 2.3.0 (January 2021)
+ - bugfix in `find_attractor_state_by_randomwalk_and_ctl` (by @etonello)
+ - adds `STGs.successors_mixed` (by @nanls)
+ - bugfix in `random_successor_mixed` (by @nanls)
  - added `STGs.successors_mixed` (by @nanls)
  - bugfix `random_successor_mixed` (by @nanls)
  - bugfix in `input_combinations` of `PrimeImplicants`, typo: `primes` -> `Primes` (by @leonardogian)

diff --git a/conda/meta.yaml b/conda/meta.yaml
@@ -1,5 +1,5 @@
 {% set name = "pyboolnet" %}
-{% set version = "2.2.9" %}
+{% set version = "2.3.0" %}
 
 package:
   name: '{{ name|lower }}'

diff --git a/docs/Installation.rst b/docs/Installation.rst
@@ -34,30 +34,21 @@ Make sure that :ref:`NetworkX <installation_networkx>`, :ref:`Graphviz <installa
 
 Install |software| with *pip*::
 
-   $ sudo pip3 install PyBoolNet-2.2.9_linux64.tar.gz
+   $ sudo pip3 install git+https://github.com/hklarner/PyBoolNet@2.3.0
 
 which should place the package here::
 
    /usr/local/lib/python<version>/dist-packages/PyBoolNet
 
 Use the option ``--user`` (literally) if you do not have sudo rights::
 
-   $ pip3 install PyBoolNet-2.2.9.tar.gz --user
+   $ pip3 install git+https://github.com/hklarner/PyBoolNet@2.3.0 --user
 
 The package is likely going to be placed here::
 
    /home/<user>/.local/lib/python<version>/dist-packages/PyBoolNet
 
 where ``<user>`` is the name you are logged in with (``$ whoami``) and ``<version>`` is the Python version you are using.
-To install |software| using *Distutils* unpack *PyBoolNet-2.2.9.tar.gz* into a temporary folder and run::
-
-   $ sudo python setup.py install
-
-again, using the ``--user`` flag if you do not have sudo rights::
-
-   $ python setup.py install --user
-
-The locations should be the same as when installing with *pip*.
 
 You should now be able to import |software|::
 
@@ -101,15 +92,15 @@ Download and install Graphviz_ and ImageMagick_ from
 
 Install |software| with *pip*::
 
-   $ sudo pip3 install PyBoolNet-2.2.9_mac64.tar.gz
+   $ sudo pip3 install git+https://github.com/hklarner/PyBoolNet@2.3.0
 
 which should place the package here::
 
    /usr/local/lib/python<version>/dist-packages/PyBoolNet
 
 Use the option ``--user`` (literally) if you do not have sudo rights::
 
-   $ pip3 install PyBoolNet-2.2.9.tar.gz --user
+   $ pip3 install git+https://github.com/hklarner/PyBoolNet@2.3.0 --user
 
 The package is likely going to be placed here::
 
@@ -142,7 +133,7 @@ on
 
 To install |software| with *pip*::
 
-   C:\> pip.exe install PyBoolNet-2.2.9_win64.tar.gz
+   C:\> pip.exe install git+https://github.com/hklarner/PyBoolNet@2.3.0
 
 which should place the package here::
 

diff --git a/docs/Substitutions.rst b/docs/Substitutions.rst
@@ -3,7 +3,7 @@
 
 
 
-.. |software| replace:: *PyBoolNet 2.2.9*
+.. |software| replace:: *PyBoolNet 2.3.0*
 .. |myemail| replace:: *hannes.klarner@fu-berlin.de*
 
 .. _BNetToPrime:  https://github.com/xstreck1/BNetToPrime

diff --git a/docs/conf.py b/docs/conf.py
@@ -65,9 +65,9 @@
 #
 # The short X.Y version.
 
-version = "2.2.9"
+version = "2.3.0"
 # The full version, including alpha/beta/rc tags.
-release = "2.2.9"
+release = "2.3.0"
 
 # The language for content autogenerated by Sphinx. Refer to documentation
 # for a list of supported languages.

diff --git a/setup.py b/setup.py
@@ -17,7 +17,9 @@
         pyboolnet_dep_folder = os.path.join("Dependencies", "win64") 
     else:
         # no idea if we could get here?
-        raise Exception 
+        raise Exception
+
+    print(f"PyBoolNet dependency folder = {pyboolnet_dep_folder}")
 
     # copy dependencies to PyBoolNet/Dependencies
     copy_tree(pyboolnet_dep_folder, os.path.join("PyBoolNet", "Dependencies"))
@@ -38,7 +40,7 @@
     package_data_files.extend([os.path.join(root, x) for x in filenames])
 
 setup(name="PyBoolNet",
-      version="2.2.9",
+      version="2.3.0",
       description="Python Toolbox for the Generation, Manipulation and Analysis of Boolean Networks.",
       author="Hannes Klarner",
       author_email="hannes.klarner@fu-berlin.de",