Question about function 'residualplot_step1'

[storm-grass]

Dear Hannah,

I'm having a problem with the function 'residualplot_step1'. When I run the examples:

library(ggplot2)
data(bmi_long, package = "LCTMtools")
require(lcmm)
model2class <- lcmm::hlme(
fixed = bmi ~ age,
mixture = ~age,
random = ~ -1,
nwg = TRUE, ng = 2, subject = "id",
data = data.frame(bmi_long[1:500, ])
)
residualplot_step1(model2class,
nameofoutcome = "bmi",
nameofage = "age",
data = bmi_long,
)

It displays the following error:
<error/rlib_error_dots_nonempty>
Error in dplyr::left_join():
! ... must be empty.
✖ Problematic argument:
• .by = nameofid

Backtrace:
▆

1. └─LCTMtools::residualplot_step1(...)
2. ├─dplyr::left_join(preds, model$pprob, .by = nameofid)
3. └─dplyr:::left_join.data.frame(preds, model$pprob, .by = nameofid)
   Run rlang::last_trace(drop = FALSE) to see 5 hidden frames.

I have updated the 'dplyr' package and it still shows this error. My R version info is:
R version 4.2.2 (2022-10-31 ucrt)
Platform: x86_64-w64-mingw32/x64 (64-bit)
Running under: Windows 10 x64 (build 22621)

I wonder if you know what might be causing these errors?

Best wishes,
Coco

[hlennon]

Hello Coco, Thank you for your email and your interest in the package. Unfortunately This package is no longer maintained. It has not been updated for the recent versions of R as I longer work in the space. At this time, I have just gone on maternity leave and will not be able to have a look at this any further. You can download zip file of the package from the page GitHub page. In the folder named R code, You will find each function if you wish to try to debug this message. Sorry, I couldn’t be more helpful at this time. Best wishes, Hannah

…

On Thu 27 Jul 2023 at 11:55, storm-grass ***@***.***> wrote: Dear Hannah, I'm having a problem with the function 'residualplot_step1'. When I run the examples: library(ggplot2) data(bmi_long, package = "LCTMtools") require(lcmm) model2class <- lcmm::hlme( fixed = bmi ~ age, mixture = ~age, random = ~ -1, nwg = TRUE, ng = 2, subject = "id", data = data.frame(bmi_long[1:500, ]) ) residualplot_step1(model2class, nameofoutcome = "bmi", nameofage = "age", data = bmi_long, ) It displays the following error: <error/rlib_error_dots_nonempty> Error in dplyr::left_join(): ! ... must be empty. ✖ Problematic argument: • .by = nameofid Backtrace: ▆ 1. └─LCTMtools::residualplot_step1(...) 2. ├─dplyr::left_join(preds, model$pprob, .by = nameofid) 3. └─dplyr:::left_join.data.frame(preds, model$pprob, .by = nameofid) Run rlang::last_trace(drop = FALSE) to see 5 hidden frames. I have updated the 'dplyr' package and it still shows this error. My R version info is: R version 4.2.2 (2022-10-31 ucrt) Platform: x86_64-w64-mingw32/x64 (64-bit) Running under: Windows 10 x64 (build 22621) I wonder if you know what might be causing these errors? Best wishes, Coco — Reply to this email directly, view it on GitHub <#7>, or unsubscribe <https://github.com/notifications/unsubscribe-auth/ACW4P7NW3OTXTM7GL75XWH3XSI3KDANCNFSM6AAAAAA2Z2LWZA> . You are receiving this because you are subscribed to this thread.Message ID: ***@***.***>

[storm-grass]

Dear Hannah,

Thanks very much for getting your reply, I've been debugging the code as you said.
Have a nice life!

Best wishes,
Coco

[cccxxx66]

same issue

[yanngjie007999]

Dear Hannah,

Thanks very much for getting your reply, I've been debugging the code as you said. Have a nice life!

Best wishes, Coco

Hello, I met the same problem about function 'residualplot_step1'. Did you solve this problem?

Best wishes.

[1203li]

Download the zip file of the package from the GitHub page. In the folder named "R code," simply modify these two lines of code:
test <- dplyr::left_join(preds, model$pprob, by = nameofid)
test <- dplyr::left_join(test, data, by = c(nameofid, nameofoutcome))
then you can solve this problem