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master broken, nobody can install RPANDA from GitHub #25

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richelbilderbeek opened this issue Jan 22, 2020 · 2 comments
Closed

master broken, nobody can install RPANDA from GitHub #25

richelbilderbeek opened this issue Jan 22, 2020 · 2 comments

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@richelbilderbeek
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richelbilderbeek commented Jan 22, 2020

Due to #23 the code on the master branch has been changed.

Sadly, this broke master:

broken

It means that nobody can install RPANDA:

> devtools::install_github("hmorlon/PANDA")
Downloading GitHub repo hmorlon/PANDA@master
✓  checking for file ‘/tmp/RtmpFEd2N0/remotes254a6b7dd5d3/hmorlon-PANDA-fc535ef/DESCRIPTION’ (492ms)
─  preparing ‘RPANDA’:
✓  checking DESCRIPTION meta-information ...
─  cleaning src
─  checking for LF line-endings in source and make files and shell scripts
─  checking for empty or unneeded directories
─  looking to see if a ‘data/datalist’ file should be added
─  building ‘RPANDA_1.7.tar.gz’ (7s)
   
Installing package into ‘/home/richel/R/x86_64-pc-linux-gnu-library/3.6’
(as ‘lib’ is unspecified)
* installing *source* package ‘RPANDA’ ...
** using staged installation
** libs
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG     -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-k1TtL4/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c RPANDA_init.c -o RPANDA_init.o
gcc -std=gnu99 -I"/usr/share/R/include" -DNDEBUG     -fpic  -g -O2 -fdebug-prefix-map=/build/r-base-k1TtL4/r-base-3.6.1=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -g  -c diversif_lognormal.c -o diversif_lognormal.o
gcc -std=gnu99 -shared -L/usr/lib/R/lib -Wl,-Bsymbolic-functions -Wl,-z,relro -o RPANDA.so RPANDA_init.o diversif_lognormal.o -L/usr/lib/R/lib -lR
installing to /home/richel/R/x86_64-pc-linux-gnu-library/3.6/00LOCK-RPANDA/00new/RPANDA/libs
** R
** data
** inst
** byte-compile and prepare package for lazy loading
** help
*** installing help indices
** building package indices
** testing if installed package can be loaded from temporary location
Error: package or namespace load failed for ‘RPANDA’ in namespaceExport(ns, exports):
 undefined exports: JSDtree
Error: loading failed
Execution halted
ERROR: loading failed
* removing ‘/home/richel/R/x86_64-pc-linux-gnu-library/3.6/RPANDA’
* restoring previous ‘/home/richel/R/x86_64-pc-linux-gnu-library/3.6/RPANDA’
Error: Failed to install 'RPANDA' from GitHub:
  (converted from warning) installation of package ‘/tmp/RtmpFEd2N0/file254a4e18e85b/RPANDA_1.7.tar.gz’ had non-zero exit status
> 

Good luck fixing this 👍

@richelbilderbeek richelbilderbeek changed the title master broken, nobody can install RPANDA master broken, nobody can install RPANDA from GitHub Jan 22, 2020
@hmorlon
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hmorlon commented Jan 22, 2020

should be fixed, thanks

@hmorlon hmorlon closed this as completed Jan 22, 2020
@richelbilderbeek
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richelbilderbeek commented Jan 22, 2020

Thanks 👍

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