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new web data 7 aug
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@emmahodcroft
emmahodcroft committed Aug 8, 2022
1 parent 85983c4 commit d473600
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Showing 31 changed files with 38,958 additions and 27,912 deletions.
2 changes: 1 addition & 1 deletion web/data/countriesToPlot.json
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@@ -1 +1 @@
{"United Kingdom": "True", "Kenya": "True", "USA": "True", "Sweden": "True", "Italy": "True", "Romania": "True", "France": "True", "India": "True", "Spain": "True", "Canada": "True", "Portugal": "True", "Switzerland": "True", "Denmark": "True", "Netherlands": "True", "Georgia": "True", "Slovenia": "True", "Ghana": "True", "Austria": "True", "Australia": "True", "Germany": "True", "Slovakia": "True", "Belgium": "True", "Japan": "True", "Iceland": "True", "Hong Kong": "True", "Singapore": "True", "Norway": "True", "Philippines": "True", "Greece": "True", "Bulgaria": "True", "South Korea": "True", "New Zealand": "True", "Israel": "True", "Nigeria": "True", "Ireland": "True", "Finland": "True", "Thailand": "True", "Brazil": "True", "Argentina": "True", "Jamaica": "True", "Chile": "True", "Poland": "True", "Luxembourg": "True", "Turkey": "True", "Pakistan": "True", "Estonia": "True", "Russia": "True", "Qatar": "True", "Malaysia": "True", "Lebanon": "True", "Bangladesh": "True", "Mexico": "True", "Maldives": "True", "Peru": "True", "Sri Lanka": "True", "Czech Republic": "True", "South Africa": "True", "Indonesia": "True", "Ecuador": "True", "Vietnam": "True", "Latvia": "True", "Aruba": "True", "Croatia": "True", "Bahrain": "True", "Curacao": "True", "Mauritius": "True", "Lithuania": "True", "Cambodia": "True", "Bonaire": "True", "Sint Maarten": "True", "Costa Rica": "True", "Colombia": "True", "Guatemala": "True", "Trinidad and Tobago": "True", "Panama": "True", "Nepal": "True", "Botswana": "True", "Papua New Guinea": "True", "Brunei": "True"}
{"United Kingdom": "True", "Kenya": "True", "USA": "True", "Sweden": "True", "Italy": "True", "Romania": "True", "France": "True", "India": "True", "Spain": "True", "Canada": "True", "Portugal": "True", "Switzerland": "True", "Denmark": "True", "Taiwan": "True", "Netherlands": "True", "Georgia": "True", "Slovenia": "True", "Ghana": "True", "Austria": "True", "Australia": "True", "Slovakia": "True", "Germany": "True", "Belgium": "True", "Japan": "True", "Iceland": "True", "Hong Kong": "True", "Singapore": "True", "Norway": "True", "Philippines": "True", "Greece": "True", "Bulgaria": "True", "Nigeria": "True", "South Korea": "True", "New Zealand": "True", "Israel": "True", "Ireland": "True", "Finland": "True", "Argentina": "True", "Jamaica": "True", "Thailand": "True", "Brazil": "True", "Poland": "True", "Chile": "True", "Turkey": "True", "Luxembourg": "True", "Estonia": "True", "Pakistan": "True", "Russia": "True", "Qatar": "True", "Malaysia": "True", "Lebanon": "True", "Bangladesh": "True", "Maldives": "True", "Peru": "True", "Mexico": "True", "Sri Lanka": "True", "Czech Republic": "True", "Ecuador": "True", "Indonesia": "True", "South Africa": "True", "Vietnam": "True", "Latvia": "True", "Croatia": "True", "Aruba": "True", "Bahrain": "True", "Curacao": "True", "Mauritius": "True", "Lithuania": "True", "Cambodia": "True", "Bonaire": "True", "Sint Maarten": "True", "Costa Rica": "True", "Colombia": "True", "Guatemala": "True", "Trinidad and Tobago": "True", "Panama": "True", "Nepal": "True", "Botswana": "True", "Papua New Guinea": "True", "Brunei": "True"}
8 changes: 4 additions & 4 deletions web/data/countryStyles.json
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Expand Up @@ -159,10 +159,6 @@
"c": "#a6a6a6",
"ls": "-."
},
"Kosovo": {
"c": "#0099ff",
"ls": "dotted"
},
"Latvia": {
"c": "#a6a6a6",
"ls": "--"
Expand Down Expand Up @@ -295,6 +291,10 @@
"c": "#ff7f00",
"ls": "-"
},
"Taiwan": {
"c": "#0099ff",
"ls": "dotted"
},
"Thailand": {
"c": "#000000",
"ls": "-"
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14 changes: 7 additions & 7 deletions web/data/mutationCounts/20A.EU1.json
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@@ -1,10 +1,10 @@
{
"S": {
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{
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"count": 165293
},
{
"mut": "S:L18F",
Expand All @@ -16,7 +16,7 @@
},
{
"mut": "S:P272L",
"count": 10667
"count": 10671
},
{
"mut": "S:L5F",
Expand All @@ -36,7 +36,7 @@
},
{
"mut": "S:Q675H",
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{
"mut": "S:D215H",
Expand All @@ -45,19 +45,19 @@
]
},
"others": {
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},
{
"mut": "ORF1a:A3623S",
"count": 8937
"count": 8943
},
{
"mut": "ORF1a:L3711F",
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16 changes: 8 additions & 8 deletions web/data/mutationCounts/20A.EU2.json
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@@ -1,10 +1,10 @@
{
"S": {
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"counts": [
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{
"mut": "S:H655Y",
Expand Down Expand Up @@ -45,31 +45,31 @@
]
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"others": {
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{
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"count": 3565
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{
"mut": "N:R385K",
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},
{
"mut": "ORF1a:K1895R",
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6 changes: 3 additions & 3 deletions web/data/mutationCounts/20B.S.732A.json
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@@ -1,6 +1,6 @@
{
"S": {
"total": 23016,
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"counts": [
{
"mut": "S:E1258D",
Expand Down Expand Up @@ -45,7 +45,7 @@
]
},
"others": {
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"counts": [
{
"mut": "ORF8:L4P",
Expand All @@ -57,7 +57,7 @@
},
{
"mut": "ORF1a:T224I",
"count": 1918
"count": 1919
},
{
"mut": "ORF3a:A54V",
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12 changes: 6 additions & 6 deletions web/data/mutationCounts/20H.Beta.V2.json
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@@ -1,10 +1,10 @@
{
"S": {
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"counts": [
{
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"count": 16522
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},
{
"mut": "S:A27S",
Expand Down Expand Up @@ -45,23 +45,23 @@
]
},
"others": {
"total": 35915,
"total": 35921,
"counts": [
{
"mut": "ORF3a:S171L",
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{
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{
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{
"mut": "ORF1a:S1612L",
"count": 4761
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},
{
"mut": "ORF1a:N2596S",
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28 changes: 14 additions & 14 deletions web/data/mutationCounts/20I.Alpha.V1.json
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@@ -1,10 +1,10 @@
{
"S": {
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"total": 1106248,
"counts": [
{
"mut": "S:K1191N",
"count": 37294
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},
{
"mut": "S:L5F",
Expand All @@ -16,7 +16,7 @@
},
{
"mut": "S:W152R",
"count": 17079
"count": 17080
},
{
"mut": "S:D138H",
Expand All @@ -36,52 +36,52 @@
},
{
"mut": "S:T572I",
"count": 5983
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}
]
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"others": {
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"counts": [
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{
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"count": 228092
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{
"mut": "ORF1b:P218L",
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{
"mut": "N:G204P",
"count": 83048
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{
"mut": "ORF1a:L730F",
"count": 81771
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{
"mut": "ORF1a:Q3966R",
"count": 63533
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{
"mut": "ORF1a:M2259I",
"count": 60351
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{
"mut": "ORF3a:W131C",
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{
"mut": "ORF1b:P1975S",
"count": 43905
"count": 43907
},
{
"mut": "ORF1a:F2780L",
"count": 43371
"count": 43372
}
]
}
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36 changes: 18 additions & 18 deletions web/data/mutationCounts/20J.Gamma.V3.json
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@@ -1,10 +1,10 @@
{
"S": {
"total": 112423,
"total": 113386,
"counts": [
{
"mut": "S:P681H",
"count": 6033
"count": 6118
},
{
"mut": "S:A688V",
Expand All @@ -20,72 +20,72 @@
},
{
"mut": "S:Q675H",
"count": 1225
"count": 1228
},
{
"mut": "S:L5F",
"count": 1091
"count": 1094
},
{
"mut": "S:A845S",
"count": 945
"count": 944
},
{
"mut": "S:D427N",
"count": 901
"count": 906
},
{
"mut": "S:H49Y",
"count": 857
"count": 858
},
{
"mut": "S:E661D",
"count": 846
"count": 851
}
]
},
"others": {
"total": 112423,
"total": 113386,
"counts": [
{
"mut": "ORF9b:Q77E",
"count": 112077
"count": 113039
},
{
"mut": "ORF1a:S2947N",
"count": 20433
"count": 20466
},
{
"mut": "ORF1a:K3573R",
"count": 6178
"count": 6180
},
{
"mut": "ORF1a:T2121I",
"count": 4529
"count": 4531
},
{
"mut": "ORF1a:H388Y",
"count": 3432
"count": 3434
},
{
"mut": "ORF1a:P309S",
"count": 3290
},
{
"mut": "ORF1a:T4355I",
"count": 3257
"count": 3258
},
{
"mut": "ORF1a:T2166I",
"count": 3059
},
{
"mut": "N:D402Y",
"count": 2455
"count": 2468
},
{
"mut": "ORF3a:I118M",
"count": 2366
"mut": "ORF1a:T1820I",
"count": 2376
}
]
}
Expand Down
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