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Minor comments on the installation instructions #12

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nterhoeven opened this issue May 2, 2019 · 3 comments
Closed

Minor comments on the installation instructions #12

nterhoeven opened this issue May 2, 2019 · 3 comments

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@nterhoeven
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Hi @holmrenser

we are currently working on a benchmarking of chloroplast assembly tools (see https://github.com/chloroExtractorTeam/benchmark). In this context, I installed IOGA on a fresh installation of Ubuntu 18.04.2 and had to install a few additional packages (see below). You might want to add a note about these in your readme.

via apt:

  • python
  • python-pip
  • wget
  • build-essential
  • default-jre
  • libz-dev
  • libcurses5-dev

via pip:

  • matplotlib
  • biopython

Best,

Niklas

@holmrenser
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Thanks for the info! I will add a note, as well as a license.
Are you sure python is not installed by default on ubuntu? I always assumed this to be the case.

@nterhoeven
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thanks a lot 👍

apparently, only python3 is preinstalled in Ubuntu 18.04 (it was different in older versions)

@holmrenser
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Updated readme.

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