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Binder conda installs broken? #4256

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cdeil opened this issue Jan 6, 2023 · 3 comments
Closed

Binder conda installs broken? #4256

cdeil opened this issue Jan 6, 2023 · 3 comments

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@cdeil
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cdeil commented Jan 6, 2023

I tried to launch a Binder using the link at https://github.com/holoviz/panel/blob/main/README.md which is this one:
https://mybinder.org/v2/gh/holoviz/panel/v0.14.1?urlpath=lab/tree/examples

It errors like this:

Step 42/55 : RUN ${KERNEL_PYTHON_PREFIX}/bin/pip install --no-cache-dir -r "binder/requirements.txt"
 ---> Running in 8442f1cd67b1
Obtaining file:///home/jovyan (from -r binder/requirements.txt (line 1))
  Installing build dependencies: started
  Installing build dependencies: finished with status 'done'
  WARNING: Missing build requirements in pyproject.toml for file:///home/jovyan (from -r binder/requirements.txt (line 1)).
  WARNING: The project does not specify a build backend, and pip cannot fall back to setuptools without 'wheel'.
  Checking if build backend supports build_editable: started
  Checking if build backend supports build_editable: finished with status 'done'
  Getting requirements to build editable: started
  Getting requirements to build editable: finished with status 'done'
  Installing backend dependencies: started
  Installing backend dependencies: finished with status 'done'
  Preparing editable metadata (pyproject.toml): started
  Preparing editable metadata (pyproject.toml): finished with status 'done'
Obtaining file:///home/jovyan/binder/jupyter-panel-apps-server (from -r binder/requirements.txt (line 2))
  Preparing metadata (setup.py): started
  Preparing metadata (setup.py): finished with status 'done'
Obtaining file:///home/jovyan/binder/jupyter-voila-docs-server (from -r binder/requirements.txt (line 3))
  Preparing metadata (setup.py): started
  Preparing metadata (setup.py): finished with status 'done'
Collecting pydeck
  Downloading pydeck-0.8.0-py2.py3-none-any.whl (4.7 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 4.7/4.7 MB 24.4 MB/s eta 0:00:00
Collecting pyecharts
  Downloading pyecharts-2.0.0-py3-none-any.whl (146 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 146.0/146.0 kB 168.9 MB/s eta 0:00:00
Collecting idom
  Downloading idom-0.42.0-py2.py3-none-any.whl (89 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 89.3/89.3 kB 69.9 MB/s eta 0:00:00
Collecting xlsxwriter
  Downloading XlsxWriter-3.0.6-py3-none-any.whl (152 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 152.4/152.4 kB 155.5 MB/s eta 0:00:00
Collecting pyarrow
  Downloading pyarrow-10.0.1-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (36.0 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 36.0/36.0 MB 110.3 MB/s eta 0:00:00
Collecting jupyter_bokeh
  Downloading jupyter_bokeh-3.0.5.tar.gz (779 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 779.7/779.7 kB 162.2 MB/s eta 0:00:00
  Installing build dependencies: started
  Installing build dependencies: finished with status 'done'
  Getting requirements to build wheel: started
  Getting requirements to build wheel: finished with status 'done'
  Preparing metadata (pyproject.toml): started
  Preparing metadata (pyproject.toml): finished with status 'done'
Collecting jupyter-vscode-proxy
  Downloading jupyter_vscode_proxy-0.2-py3-none-any.whl (4.6 kB)
Collecting tqdm
  Downloading tqdm-4.64.1-py2.py3-none-any.whl (78 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 78.5/78.5 kB 147.5 MB/s eta 0:00:00
Requirement already satisfied: bleach in /srv/conda/envs/notebook/lib/python3.7/site-packages (from -r binder/requirements.txt (line 12)) (5.0.1)
Requirement already satisfied: setuptools in /srv/conda/envs/notebook/lib/python3.7/site-packages (from panel==0.14.1->-r binder/requirements.txt (line 1)) (65.6.3)
Collecting bokeh<2.5.0,>=2.4.0
  Downloading bokeh-2.4.3-py3-none-any.whl (18.5 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 18.5/18.5 MB 54.0 MB/s eta 0:00:00
Collecting pyviz-comms>=0.7.4
  Downloading pyviz_comms-2.2.1-py2.py3-none-any.whl (42 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 42.9/42.9 kB 65.9 MB/s eta 0:00:00
Collecting pyct>=0.4.4
  Downloading pyct-0.4.8-py2.py3-none-any.whl (15 kB)
Requirement already satisfied: typing-extensions in /srv/conda/envs/notebook/lib/python3.7/site-packages (from panel==0.14.1->-r binder/requirements.txt (line 1)) (4.4.0)
Requirement already satisfied: requests in /srv/conda/envs/notebook/lib/python3.7/site-packages (from panel==0.14.1->-r binder/requirements.txt (line 1)) (2.28.1)
Collecting markdown
  Downloading Markdown-3.4.1-py3-none-any.whl (93 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 93.3/93.3 kB 8.4 MB/s eta 0:00:00
Collecting param>=1.12.0
  Downloading param-1.12.3-py2.py3-none-any.whl (87 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 87.0/87.0 kB 78.4 MB/s eta 0:00:00
Collecting seaborn
  Downloading seaborn-0.12.2-py3-none-any.whl (293 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 293.3/293.3 kB 38.9 MB/s eta 0:00:00
Collecting aiohttp
  Downloading aiohttp-3.8.3-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (948 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 948.0/948.0 kB 94.7 MB/s eta 0:00:00
Requirement already satisfied: ipywidgets in /srv/conda/envs/notebook/lib/python3.7/site-packages (from panel==0.14.1->-r binder/requirements.txt (line 1)) (8.0.2)
Collecting folium
  Downloading folium-0.14.0-py2.py3-none-any.whl (102 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 102.3/102.3 kB 141.7 MB/s eta 0:00:00
Collecting ipympl
  Downloading ipympl-0.9.2-py2.py3-none-any.whl (510 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 510.3/510.3 kB 53.5 MB/s eta 0:00:00
Collecting django<4
  Downloading Django-3.2.16-py3-none-any.whl (7.9 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 7.9/7.9 MB 33.7 MB/s eta 0:00:00
Collecting pyinstrument>=4.0
  Downloading pyinstrument-4.4.0-cp37-cp37m-manylinux_2_5_x86_64.manylinux1_x86_64.manylinux_2_17_x86_64.manylinux2014_x86_64.whl (119 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 119.7/119.7 kB 47.5 MB/s eta 0:00:00
Collecting ipywidgets-bokeh
  Downloading ipywidgets_bokeh-1.3.0.tar.gz (977 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 977.7/977.7 kB 9.0 MB/s eta 0:00:00
  Preparing metadata (setup.py): started
  Preparing metadata (setup.py): finished with status 'done'
Collecting vega-datasets
  Downloading vega_datasets-0.9.0-py3-none-any.whl (210 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 210.8/210.8 kB 22.2 MB/s eta 0:00:00
Collecting lxml
  Downloading lxml-4.9.2-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.manylinux_2_24_x86_64.whl (6.6 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 6.6/6.6 MB 66.8 MB/s eta 0:00:00
Collecting graphviz
  Downloading graphviz-0.20.1-py3-none-any.whl (47 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 47.0/47.0 kB 116.8 MB/s eta 0:00:00
Collecting pyvista<0.33
  Downloading pyvista-0.32.1-py3-none-any.whl (1.4 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.4/1.4 MB 25.8 MB/s eta 0:00:00
Collecting altair
  Downloading altair-4.2.0-py3-none-any.whl (812 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 812.8/812.8 kB 60.8 MB/s eta 0:00:00
Collecting channels
  Downloading channels-4.0.0-py3-none-any.whl (28 kB)
Collecting plotly>=4.0
  Downloading plotly-5.11.0-py2.py3-none-any.whl (15.3 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 15.3/15.3 MB 22.9 MB/s eta 0:00:00
Collecting scikit-learn
  Downloading scikit_learn-1.0.2-cp37-cp37m-manylinux_2_17_x86_64.manylinux2014_x86_64.whl (24.8 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 24.8/24.8 MB 33.0 MB/s eta 0:00:00
Collecting pygraphviz
  Downloading pygraphviz-1.7.zip (118 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 118.8/118.8 kB 155.3 MB/s eta 0:00:00
  Preparing metadata (setup.py): started
  Preparing metadata (setup.py): finished with status 'done'
Collecting streamz
  Downloading streamz-0.6.4-py2.py3-none-any.whl (76 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 76.9/76.9 kB 98.2 MB/s eta 0:00:00
Collecting networkx>=2.5
  Downloading networkx-2.6.3-py3-none-any.whl (1.9 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 1.9/1.9 MB 26.7 MB/s eta 0:00:00
Collecting ipyleaflet
  Downloading ipyleaflet-0.17.2-py3-none-any.whl (3.7 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 3.7/3.7 MB 38.1 MB/s eta 0:00:00
Collecting hvplot
  Downloading hvplot-0.8.2-py2.py3-none-any.whl (3.2 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 3.2/3.2 MB 96.3 MB/s eta 0:00:00
Collecting datashader
  Downloading datashader-0.14.3-py2.py3-none-any.whl (18.2 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 18.2/18.2 MB 37.2 MB/s eta 0:00:00
Collecting vtk==9.0.1
  Downloading vtk-9.0.1-cp37-cp37m-manylinux2010_x86_64.whl (103.4 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 103.4/103.4 MB 4.7 MB/s eta 0:00:00
Collecting croniter
  Downloading croniter-1.3.8-py2.py3-none-any.whl (18 kB)
Collecting xarray
  Downloading xarray-0.20.2-py3-none-any.whl (845 kB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 845.2/845.2 kB 84.0 MB/s eta 0:00:00
Collecting ipyvolume
  Downloading ipyvolume-0.5.2-py2.py3-none-any.whl (2.9 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 2.9/2.9 MB 34.2 MB/s eta 0:00:00
Collecting xgboost
  Downloading xgboost-1.6.2-py3-none-manylinux2014_x86_64.whl (255.9 MB)
     ━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━━ 255.9/255.9 MB 28.8 MB/s eta 0:00:00
ERROR: Ignored the following versions that require a different python version: 0.21.0 Requires-Python >=3.8; 0.21.1 Requires-Python >=3.8; 1.1.0 Requires-Python >=3.8; 1.1.1 Requires-Python >=3.8; 1.1.2 Requires-Python >=3.8; 1.1.3 Requires-Python >=3.8; 1.10 Requires-Python >=3.8; 1.10rc1 Requires-Python >=3.8; 1.2.0 Requires-Python >=3.8; 1.2.0rc1 Requires-Python >=3.8; 1.7.0 Requires-Python >=3.8; 1.7.0.post0 Requires-Python >=3.8; 1.7.0rc1 Requires-Python >=3.8; 1.7.1 Requires-Python >=3.8; 1.7.2 Requires-Python >=3.8; 1.9 Requires-Python >=3.8; 2.7 Requires-Python >=3.8; 2.7.1 Requires-Python >=3.8; 2.7rc1 Requires-Python >=3.8; 2.8 Requires-Python >=3.8; 2.8.1 Requires-Python >=3.8; 2.8.1rc1 Requires-Python >=3.8; 2.8.2 Requires-Python >=3.8; 2.8.3 Requires-Python >=3.8; 2.8.4 Requires-Python >=3.8; 2.8.5 Requires-Python >=3.8; 2.8.6 Requires-Python >=3.8; 2.8.7 Requires-Python >=3.8; 2.8.8 Requires-Python >=3.8; 2.8rc1 Requires-Python >=3.8; 2022.10.0 Requires-Python >=3.8; 2022.11.0 Requires-Python >=3.8; 2022.12.0 Requires-Python >=3.8; 2022.3.0 Requires-Python >=3.8; 2022.6.0 Requires-Python >=3.8; 2022.6.0rc0 Requires-Python >=3.8; 2022.9.0 Requires-Python >=3.8; 3.0.0 Requires-Python >=3.8; 3.0.0.dev10 Requires-Python >=3.8; 3.0.0.dev11 Requires-Python >=3.8; 3.0.0.dev13 Requires-Python >=3.8; 3.0.0.dev14 Requires-Python >=3.8; 3.0.0.dev15 Requires-Python >=3.8; 3.0.0.dev16 Requires-Python >=3.8; 3.0.0.dev17 Requires-Python >=3.8; 3.0.0.dev18 Requires-Python >=3.8; 3.0.0.dev19 Requires-Python >=3.8; 3.0.0.dev20 Requires-Python >=3.8; 3.0.0.dev3 Requires-Python >=3.8; 3.0.0.dev4 Requires-Python >=3.8; 3.0.0.dev5 Requires-Python >=3.8; 3.0.0.dev6 Requires-Python >=3.8; 3.0.0.dev7 Requires-Python >=3.8; 3.0.0.dev8 Requires-Python >=3.8; 3.0.0.dev9 Requires-Python >=3.8; 3.0.0rc1 Requires-Python >=3.8; 3.0.0rc2 Requires-Python >=3.8; 3.0.0rc3 Requires-Python >=3.8; 3.0.0rc4 Requires-Python >=3.8; 3.0.0rc5 Requires-Python >=3.8; 3.0.0rc6 Requires-Python >=3.8; 3.0.1 Requires-Python >=3.8; 3.0.1rc1 Requires-Python >=3.8; 3.0.2 Requires-Python >=3.8; 3.0.2rc1 Requires-Python >=3.8; 3.0.3 Requires-Python >=3.8; 3.0.3rc1 Requires-Python >=3.8; 3.0b1 Requires-Python >=3.8; 3.0rc1 Requires-Python >=3.8; 3.1.0.dev1 Requires-Python >=3.8; 4.0 Requires-Python >=3.8; 4.0.1 Requires-Python >=3.8; 4.0.2 Requires-Python >=3.8; 4.0.3 Requires-Python >=3.8; 4.0.4 Requires-Python >=3.8; 4.0.5 Requires-Python >=3.8; 4.0.6 Requires-Python >=3.8; 4.0.7 Requires-Python >=3.8; 4.0.8 Requires-Python >=3.8; 4.0a1 Requires-Python >=3.8; 4.0b1 Requires-Python >=3.8; 4.0rc1 Requires-Python >=3.8; 4.1 Requires-Python >=3.8; 4.1.1 Requires-Python >=3.8; 4.1.2 Requires-Python >=3.8; 4.1.3 Requires-Python >=3.8; 4.1.4 Requires-Python >=3.8; 4.1.5 Requires-Python >=3.8; 4.1a1 Requires-Python >=3.8; 4.1b1 Requires-Python >=3.8; 4.1rc1 Requires-Python >=3.8
ERROR: Could not find a version that satisfies the requirement python-graphviz; extra == "examples" (from panel[examples]) (from versions: none)
ERROR: No matching distribution found for python-graphviz; extra == "examples"
Removing intermediate container 8442f1cd67b1
The command '/bin/sh -c ${KERNEL_PYTHON_PREFIX}/bin/pip install --no-cache-dir -r "binder/requirements.txt"' returned a non-zero code: 1

I also clicked on the Binder link at https://panel.holoviz.org/gallery/demos/gapminders.html which tries to launch this:
https://mybinder.org/v2/gh/panel-demos/gapminder/master?urlpath=/gapminder.ipynb

It fails with a different install error:

Step 39/52 : RUN TIMEFORMAT='time: %3R' bash -c 'time ${MAMBA_EXE} env update -p ${NB_PYTHON_PREFIX} --file "environment.yml" && time ${MAMBA_EXE} clean --all -f -y && ${MAMBA_EXE} list -p ${NB_PYTHON_PREFIX} '
 ---> Running in ef1ef7be3896


Looking for: ['nbserverproxy', 'conda-forge::altair', 'conda-forge::plotly', 'holoviews=1.12.2', 'hvplot=0.4.0', 'panel=0.5.1', 'param=1.9.0', 'pyviz_comms=0.7.2', 'bokeh=1.1.0', "tornado[version='<6']"]


Encountered problems while solving:
  - nothing provides __win needed by jupyterhub-base-3.0.0-pyh08f2357_1

time: 29.519
Removing intermediate container ef1ef7be3896
The command '/bin/sh -c TIMEFORMAT='time: %3R' bash -c 'time ${MAMBA_EXE} env update -p ${NB_PYTHON_PREFIX} --file "environment.yml" && time ${MAMBA_EXE} clean --all -f -y && ${MAMBA_EXE} list -p ${NB_PYTHON_PREFIX} '' returned a non-zero code: 1
@droumis
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droumis commented Jan 10, 2023

Confirmed, I'm seeing the same errors.

@MarcSkovMadsen MarcSkovMadsen mentioned this issue Jul 14, 2023
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@cdeil
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cdeil commented Nov 1, 2023

@MarcSkovMadsen - can this be closed?

Do you still link to Binder somewhere from the docs or support it?

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cdeil commented Mar 23, 2024

I'm closing this old issue.

There doesn't seem to be a link to Binder any more from the README or docs.

I do see there's still this folder: https://github.com/holoviz/panel/tree/7ea314b7ca604dfb205c442034c24eaec6f5acd1/binder

@cdeil cdeil closed this as completed Mar 23, 2024
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