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  1. PacificBiosciences/HiPhase PacificBiosciences/HiPhase Public

    Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads

    Rust 56 4

  2. HudsonAlpha/fmlrc2 HudsonAlpha/fmlrc2 Public

    Rust 41 5

  3. fmlrc fmlrc Public

    a long-read error correction tool using the multi-string Burrows Wheeler Transform

    C++ 42 3

  4. msbwt msbwt Public

    A python toolkit for building and querying multi-string BWTs

    Python 26 7

  5. HudsonAlpha/CSL_public_benchmark HudsonAlpha/CSL_public_benchmark Public

    Location of public benchmarking; primarily final results

    Shell 18

  6. PacificBiosciences/MethBat PacificBiosciences/MethBat Public

    A battery of methylation tools for PacBio HiFi reads

    19