BIO_INFORMATIC_TOOL_BOX

Hey ! This is my tool box for Bioinformatics. You will find everyday's programs for a bioinformatician, like small manipulations on fasta file, a program to merge RPKM files of several individuals...

Name		Name	Last commit message	Last commit date
Latest commit History 37 Commits
GET_BAYTES_DIC2_LLOYD		GET_BAYTES_DIC2_LLOYD
GET_BAYTES_DIC2_SILUR		GET_BAYTES_DIC2_SILUR
REPRESENTING_VARIABLES_AMONG_CHROMOSOME		REPRESENTING_VARIABLES_AMONG_CHROMOSOME
TMP		TMP
TMP2		TMP2
.DS_Store		.DS_Store
.Rapp.history		.Rapp.history
Analyse_ELISA_monoplaque_Yan.r		Analyse_ELISA_monoplaque_Yan.r
Calculate_LOD_threshold.R		Calculate_LOD_threshold.R
Calculate_mean_neighbour.R		Calculate_mean_neighbour.R
Caracterize_my_SNPs.R		Caracterize_my_SNPs.R
Compare_2_maps_with_metaQTL.sh		Compare_2_maps_with_metaQTL.sh
Compare_Genetic_Maps.R		Compare_Genetic_Maps.R
Extract_CDS_from_PFAS.py		Extract_CDS_from_PFAS.py
Find_parents_allele_TRAM.py		Find_parents_allele_TRAM.py
Get_Cds_From_Pfas.py		Get_Cds_From_Pfas.py
Get_Contigs_Infos.py		Get_Contigs_Infos.py
Get_SNP_Infos.py		Get_SNP_Infos.py
Get_contig_size_in_fasta.py		Get_contig_size_in_fasta.py
Homeologous_genes_expression.py		Homeologous_genes_expression.py
Keep_best_SNP_per_contig.py		Keep_best_SNP_per_contig.py
Make_a_venn_diagramm.r		Make_a_venn_diagramm.r
Make_adaptater_for_trimmomatic.sh		Make_adaptater_for_trimmomatic.sh
Merge_RPKM_Files.py		Merge_RPKM_Files.py
Merge_idxstats.py		Merge_idxstats.py
Parse_annotation_P_Leroy.py		Parse_annotation_P_Leroy.py
README.md		README.md
Read_Bread_wheat_annotation.py		Read_Bread_wheat_annotation.py
Represent_discrete_variable_correlation.R		Represent_discrete_variable_correlation.R
Represent_variable_among_field.R		Represent_variable_among_field.R
SNP_attendus_AND_bonus_clean.raw		SNP_attendus_AND_bonus_clean.raw
Take_position_in_fasta.py		Take_position_in_fasta.py
calculate_GC_content.py		calculate_GC_content.py
calculate_adjusted_LD.R		calculate_adjusted_LD.R
calculate_allelic_desequilibrium_in_raw_files.sh		calculate_allelic_desequilibrium_in_raw_files.sh
clustering_from_blastn.py		clustering_from_blastn.py
compare_2_files.py		compare_2_files.py
concatenate_alr_and_gen.py		concatenate_alr_and_gen.py
count_chrossing_over.py		count_chrossing_over.py
count_reads_of_each_nucleotide_in_alr.py		count_reads_of_each_nucleotide_in_alr.py
cut_pfas_in_contigs.py		cut_pfas_in_contigs.py
delete_redondant_sequences_in_fasta.py		delete_redondant_sequences_in_fasta.py
delete_some_sequences_in_fasta.py		delete_some_sequences_in_fasta.py
filter_contigs_size.py		filter_contigs_size.py
find_best_blast.py		find_best_blast.py
find_blast_family.py		find_blast_family.py
find_info_precise_position_in_alr.py		find_info_precise_position_in_alr.py
find_info_precise_position_in_gen.py		find_info_precise_position_in_gen.py
get_cds_from_pfas_ble_tendre.py		get_cds_from_pfas_ble_tendre.py
get_majoritary_nucleotide_of_precise_positions_in_gen.py		get_majoritary_nucleotide_of_precise_positions_in_gen.py
make_PFAS_from_Fasta_and_SNP.py		make_PFAS_from_Fasta_and_SNP.py
make_SNP_file_format_fasta.py		make_SNP_file_format_fasta.py
nucleotidic_distance_between_individuals.py		nucleotidic_distance_between_individuals.py
pairwiseDist_v02.jar		pairwiseDist_v02.jar
parse_psql_file.py		parse_psql_file.py
recode_SNP_file_in_012_format.py		recode_SNP_file_in_012_format.py
recode_SNP_for_carthagene.py		recode_SNP_for_carthagene.py
rename_fasta_from_liste.py		rename_fasta_from_liste.py
return_LG_in_map.R		return_LG_in_map.R
reverse_complement.py		reverse_complement.py
rogne_reads.py		rogne_reads.py
split_fasta_by_contigs.py		split_fasta_by_contigs.py
split_file_in_small_pieces.py		split_file_in_small_pieces.py
summarize_coverage_in_alr.py		summarize_coverage_in_alr.py
take_some_contigs_from_alr_or_fasta.py		take_some_contigs_from_alr_or_fasta.py
take_some_contigs_from_alr_or_fasta_by_MATCH.py		take_some_contigs_from_alr_or_fasta_by_MATCH.py
take_some_lines_from_a_table.py		take_some_lines_from_a_table.py
take_some_positions_from_alr_or_gen.py		take_some_positions_from_alr_or_gen.py
take_some_reads_from_fastq.py		take_some_reads_from_fastq.py
transform_fasta_in_monoline.py		transform_fasta_in_monoline.py

holtzy/Bioinformatics-Tool-Box

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