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hoogenboom-group

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  1. PSF-Extractor PSF-Extractor Public

    Characterize the PSF of an optical setup

    Jupyter Notebook 8

  2. SF SF Public

    Depth-dependent axial rescaling of 3D fluorescence microscopy data sets

    Jupyter Notebook 4 1

Repositories

Showing 10 of 18 repositories
  • em-infrastructure Public
    hoogenboom-group/em-infrastructure’s past year of commit activity
    Shell 0 MIT 0 0 0 Updated Jul 23, 2024
  • fastem-sofima Public

    Scable Optical Flow-based Image Alignment (SOFIMA) of FAST-EM datasets.

    hoogenboom-group/fastem-sofima’s past year of commit activity
    Jupyter Notebook 0 GPL-3.0 0 0 0 Updated Jul 12, 2024
  • interactive-render-workflow Public

    Interactive workflow for aligning volume electron microscopy datasets.

    hoogenboom-group/interactive-render-workflow’s past year of commit activity
    Jupyter Notebook 0 GPL-3.0 0 4 0 Updated Jul 12, 2024
  • scripted-render-pipeline Public

    automated pipeline interfacing with render-ws rest api

    hoogenboom-group/scripted-render-pipeline’s past year of commit activity
    Python 0 GPL-3.0 0 6 (1 issue needs help) 1 Updated Jul 12, 2024
  • mitonet-seg Public

    MitoNet inference on Volume EM datasets

    hoogenboom-group/mitonet-seg’s past year of commit activity
    Python 0 0 2 0 Updated Jul 4, 2024
  • Kievits-FASTEM-array-tomography-2024 Public
    hoogenboom-group/Kievits-FASTEM-array-tomography-2024’s past year of commit activity
    Jupyter Notebook 0 GPL-3.0 0 0 0 Updated Jul 4, 2024
  • iCAT-workflow Public

    Post-processing workflow for integrated correlative array tomography (iCAT)

    hoogenboom-group/iCAT-workflow’s past year of commit activity
    Jupyter Notebook 2 CC-BY-4.0 0 3 0 Updated Jun 7, 2024
  • SF Public

    Depth-dependent axial rescaling of 3D fluorescence microscopy data sets

    hoogenboom-group/SF’s past year of commit activity
    Jupyter Notebook 4 CC-BY-4.0 1 0 0 Updated Jun 1, 2024
  • PSF-Extractor Public

    Characterize the PSF of an optical setup

    hoogenboom-group/PSF-Extractor’s past year of commit activity
    Jupyter Notebook 8 CC-BY-4.0 0 3 0 Updated May 7, 2024
  • napari-psf-extractor Public

    Point spread function extractor in napari

    hoogenboom-group/napari-psf-extractor’s past year of commit activity
    Python 1 GPL-3.0 0 0 0 Updated Dec 26, 2023
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