feat(#601): set lookupkey as phenotype if missing #95

	name: Annotation Interface

	on:
	push:
	paths:
	- '.github/workflows/anni.yml'
	- 'yarn.lock'
	- 'anni/**'

	defaults:
	run:
	working-directory: ./anni

	jobs:
	lint:
	name: Lint
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v2
	- run: yarn
	- run: yarn lint

	test:
	name: Test
	runs-on: ubuntu-latest
	env:
	DB_HOST: localhost
	DB_PORT: 27017
	DB_USER: mongo
	DB_PASSWORD: mongo
	services:
	mongodb:
	image: mongo:5.0
	env:
	MONGO_INITDB_ROOT_USERNAME: ${{ env.DB_USER }}
	MONGO_INITDB_ROOT_PASSWORD: ${{ env.DB_PASSWORD }}
	options: >-
	--health-cmd mongosh
	--health-interval 10s
	--health-timeout 5s
	--health-retries 5
	ports:
	- 27017:27017
	steps:
	- uses: actions/checkout@v2
	- run: yarn
	- run: yarn test
	- uses: actions/upload-artifact@v3
	with:
	name: coverage-report
	path: anni/coverage

	codecov:
	name: Generate Code Coverage Report
	needs: [test]
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v2
	- uses: actions/download-artifact@v3
	with:
	name: coverage-report
	path: anni/coverage
	- uses: codecov/codecov-action@v2
	with:
	flags: anni
	directory: anni/coverage

	build:
	name: Build
	needs: [lint, test]
	runs-on: ubuntu-latest
	steps:
	- uses: actions/checkout@v2
	- run: yarn
	- run: yarn build

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