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load_crispr_groups description updated
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tgrego committed Aug 14, 2014
1 parent b911cb4 commit f4becbf
Showing 1 changed file with 16 additions and 11 deletions.
27 changes: 16 additions & 11 deletions lib/LIMS2/Task/General/LoadCrisprGroups.pm
Expand Up @@ -8,17 +8,24 @@ LIMS2::Task::General::LoadCrisprGroups
=head1 DESCRIPTION
This command creates Design Plates in LIMS2.
This command creates crispr groups in LIMS2.
Required options:
- plate: Name of design plate to create
- user: Name of user creating the plate
- design-plate-data: file containing data about the design plate wells.
The design plate data file is a csv file, with 2 columns:
- well_name
- design_id
The file must have these column headers.
- gene_type: Gene type id, for example HGNC or MGI
- upload_file: CSV file containing crispr group data to be uploaded
The design plate data file is a csv file, with at least a column named gene,and 2 columns
for each crispr in the group representing the crispr_id and if its left_of_target or not.
Column follows:
- gene
- crispr_1
- left_1
- crispr_2
- left_2
...
gene can be gene id or marker symbol.
crispr can be lims2_crispr_id or wge_crispr_id.
=cut

Expand All @@ -29,8 +36,6 @@ use LIMS2::Model;
use MooseX::Types::Path::Class;
use namespace::autoclean;

use Smart::Comments;

extends 'LIMS2::Task';

override abstract => sub {
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