Amended Single_Targeted model

htgt · Dec 5, 2012 · cc2ec57 · cc2ec57
2 parents d7c0db5 + ac8d1cd
commit cc2ec57
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Showing 163 changed files with 168 additions and 164 deletions.
diff --git a/Changes b/Changes
@@ -1,3 +1,7 @@
+0.034     2012-12-05 15:41:39 Europe/London
+
+    Amended Single_Targeted model
+
 0.033     2012-12-04 16:01:10 Europe/London
 
     Added design_type for cre_knockins

diff --git a/META.yml b/META.yml
@@ -122,4 +122,4 @@ requires:
   strict: 0
   utf8: 0
   warnings: 0
-version: 0.033
+version: 0.034
diff --git a/README b/README
@@ -1,7 +1,7 @@
 
 
 This archive contains the distribution LIMS2-WebApp,
-version 0.033:
+version 0.034:
 
   Catalyst based application
 

diff --git a/lib/LIMS2/AlleleRequest.pm b/lib/LIMS2/AlleleRequest.pm
@@ -1,7 +1,7 @@
 package LIMS2::AlleleRequest;
 ## no critic(RequireUseStrict,RequireUseWarnings)
 {
-    $LIMS2::AlleleRequest::VERSION = '0.033';
+    $LIMS2::AlleleRequest::VERSION = '0.034';
 }
 ## use critic
 

diff --git a/lib/LIMS2/AlleleRequest/DoubleTargeted.pm b/lib/LIMS2/AlleleRequest/DoubleTargeted.pm
@@ -1,7 +1,7 @@
 package LIMS2::AlleleRequest::DoubleTargeted;
 ## no critic(RequireUseStrict,RequireUseWarnings)
 {
-    $LIMS2::AlleleRequest::DoubleTargeted::VERSION = '0.033';
+    $LIMS2::AlleleRequest::DoubleTargeted::VERSION = '0.034';
 }
 ## use critic
 

diff --git a/lib/LIMS2/AlleleRequest/SingleTargeted.pm b/lib/LIMS2/AlleleRequest/SingleTargeted.pm
@@ -1,7 +1,7 @@
 package LIMS2::AlleleRequest::SingleTargeted;
 ## no critic(RequireUseStrict,RequireUseWarnings)
 {
-    $LIMS2::AlleleRequest::SingleTargeted::VERSION = '0.033';
+    $LIMS2::AlleleRequest::SingleTargeted::VERSION = '0.034';
 }
 ## use critic
 
@@ -56,7 +56,7 @@ sub _build_allele_design_wells {
 
 sub _build_allele_vector_wells {
     my $self = shift;
-    return [ $self->final_vector_wells( $self->gene_design_wells, $self->cassette_function ) ];
+    return [ $self->final_vector_wells( $self->allele_design_wells, $self->cassette_function ) ];
 }
 
 sub _build_allele_dna_wells {
@@ -66,7 +66,7 @@ sub _build_allele_dna_wells {
 
 sub _build_allele_electroporation_wells {
     my $self = shift;
-    return [ $self->electroporation_wells( $self->gene_vector_wells, 'EP' ) ];
+    return [ $self->electroporation_wells( $self->allele_vector_wells, 'EP' ) ];
 }
 
 sub all_vector_wells {

diff --git a/lib/LIMS2/AlleleRequestFactory.pm b/lib/LIMS2/AlleleRequestFactory.pm
@@ -1,7 +1,7 @@
 package LIMS2::AlleleRequestFactory;
 ## no critic(RequireUseStrict,RequireUseWarnings)
 {
-    $LIMS2::AlleleRequestFactory::VERSION = '0.033';
+    $LIMS2::AlleleRequestFactory::VERSION = '0.034';
 }
 ## use critic
 

diff --git a/lib/LIMS2/CassetteFunction.pm b/lib/LIMS2/CassetteFunction.pm
@@ -1,7 +1,7 @@
 package LIMS2::CassetteFunction;
 ## no critic(RequireUseStrict,RequireUseWarnings)
 {
-    $LIMS2::CassetteFunction::VERSION = '0.033';
+    $LIMS2::CassetteFunction::VERSION = '0.034';
 }
 ## use critic
 

diff --git a/lib/LIMS2/Catalyst/Controller/REST.pm b/lib/LIMS2/Catalyst/Controller/REST.pm
@@ -1,7 +1,7 @@
 package LIMS2::Catalyst::Controller::REST;
 ## no critic(RequireUseStrict,RequireUseWarnings)
 {
-    $LIMS2::Catalyst::Controller::REST::VERSION = '0.033';
+    $LIMS2::Catalyst::Controller::REST::VERSION = '0.034';
 }
 ## use critic
 

diff --git a/lib/LIMS2/Model.pm b/lib/LIMS2/Model.pm
@@ -1,7 +1,7 @@
 package LIMS2::Model;
 ## no critic(RequireUseStrict,RequireUseWarnings)
 {
-    $LIMS2::Model::VERSION = '0.033';
+    $LIMS2::Model::VERSION = '0.034';
 }
 ## use critic
 

diff --git a/lib/LIMS2/Model/AuthDB.pm b/lib/LIMS2/Model/AuthDB.pm
@@ -3,7 +3,7 @@ use utf8;
 package LIMS2::Model::AuthDB;
 ## no critic(RequireUseStrict,RequireUseWarnings)
 {
-    $LIMS2::Model::AuthDB::VERSION = '0.033';
+    $LIMS2::Model::AuthDB::VERSION = '0.034';
 }
 ## use critic
 

diff --git a/lib/LIMS2/Model/Constants.pm b/lib/LIMS2/Model/Constants.pm
@@ -1,7 +1,7 @@
 package LIMS2::Model::Constants;
 ## no critic(RequireUseStrict,RequireUseWarnings)
 {
-    $LIMS2::Model::Constants::VERSION = '0.033';
+    $LIMS2::Model::Constants::VERSION = '0.034';
 }
 ## use critic
 

diff --git a/lib/LIMS2/Model/DBConnect.pm b/lib/LIMS2/Model/DBConnect.pm
@@ -1,7 +1,7 @@
 package LIMS2::Model::DBConnect;
 ## no critic(RequireUseStrict,RequireUseWarnings)
 {
-    $LIMS2::Model::DBConnect::VERSION = '0.033';
+    $LIMS2::Model::DBConnect::VERSION = '0.034';
 }
 ## use critic
 

diff --git a/lib/LIMS2/Model/FormValidator.pm b/lib/LIMS2/Model/FormValidator.pm
@@ -1,7 +1,7 @@
 package LIMS2::Model::FormValidator;
 ## no critic(RequireUseStrict,RequireUseWarnings)
 {
-    $LIMS2::Model::FormValidator::VERSION = '0.033';
+    $LIMS2::Model::FormValidator::VERSION = '0.034';
 }
 ## use critic
 

diff --git a/lib/LIMS2/Model/FormValidator/Constraint.pm b/lib/LIMS2/Model/FormValidator/Constraint.pm
@@ -1,7 +1,7 @@
 package LIMS2::Model::FormValidator::Constraint;
 ## no critic(RequireUseStrict,RequireUseWarnings)
 {
-    $LIMS2::Model::FormValidator::Constraint::VERSION = '0.033';
+    $LIMS2::Model::FormValidator::Constraint::VERSION = '0.034';
 }
 ## use critic
 

diff --git a/lib/LIMS2/Model/Plugin/BAC.pm b/lib/LIMS2/Model/Plugin/BAC.pm
@@ -1,7 +1,7 @@
 package LIMS2::Model::Plugin::BAC;
 ## no critic(RequireUseStrict,RequireUseWarnings)
 {
-    $LIMS2::Model::Plugin::BAC::VERSION = '0.033';
+    $LIMS2::Model::Plugin::BAC::VERSION = '0.034';
 }
 ## use critic
 

diff --git a/lib/LIMS2/Model/Plugin/Design.pm b/lib/LIMS2/Model/Plugin/Design.pm
@@ -1,7 +1,7 @@
 package LIMS2::Model::Plugin::Design;
 ## no critic(RequireUseStrict,RequireUseWarnings)
 {
-    $LIMS2::Model::Plugin::Design::VERSION = '0.033';
+    $LIMS2::Model::Plugin::Design::VERSION = '0.034';
 }
 ## use critic
 

diff --git a/lib/LIMS2/Model/Plugin/Gene.pm b/lib/LIMS2/Model/Plugin/Gene.pm
@@ -1,7 +1,7 @@
 package LIMS2::Model::Plugin::Gene;
 ## no critic(RequireUseStrict,RequireUseWarnings)
 {
-    $LIMS2::Model::Plugin::Gene::VERSION = '0.033';
+    $LIMS2::Model::Plugin::Gene::VERSION = '0.034';
 }
 ## use critic
 

diff --git a/lib/LIMS2/Model/Plugin/Plate.pm b/lib/LIMS2/Model/Plugin/Plate.pm
@@ -1,7 +1,7 @@
 package LIMS2::Model::Plugin::Plate;
 ## no critic(RequireUseStrict,RequireUseWarnings)
 {
-    $LIMS2::Model::Plugin::Plate::VERSION = '0.033';
+    $LIMS2::Model::Plugin::Plate::VERSION = '0.034';
 }
 ## use critic
 

diff --git a/lib/LIMS2/Model/Plugin/Process.pm b/lib/LIMS2/Model/Plugin/Process.pm
@@ -1,7 +1,7 @@
 package LIMS2::Model::Plugin::Process;
 ## no critic(RequireUseStrict,RequireUseWarnings)
 {
-    $LIMS2::Model::Plugin::Process::VERSION = '0.033';
+    $LIMS2::Model::Plugin::Process::VERSION = '0.034';
 }
 ## use critic
 

diff --git a/lib/LIMS2/Model/Plugin/QC.pm b/lib/LIMS2/Model/Plugin/QC.pm
@@ -1,7 +1,7 @@
 package LIMS2::Model::Plugin::QC;
 ## no critic(RequireUseStrict,RequireUseWarnings)
 {
-    $LIMS2::Model::Plugin::QC::VERSION = '0.033';
+    $LIMS2::Model::Plugin::QC::VERSION = '0.034';
 }
 ## use critic
 

diff --git a/lib/LIMS2/Model/Plugin/Species.pm b/lib/LIMS2/Model/Plugin/Species.pm
@@ -1,7 +1,7 @@
 package LIMS2::Model::Plugin::Species;
 ## no critic(RequireUseStrict,RequireUseWarnings)
 {
-    $LIMS2::Model::Plugin::Species::VERSION = '0.033';
+    $LIMS2::Model::Plugin::Species::VERSION = '0.034';
 }
 ## use critic
 

diff --git a/lib/LIMS2/Model/Plugin/User.pm b/lib/LIMS2/Model/Plugin/User.pm
@@ -1,7 +1,7 @@
 package LIMS2::Model::Plugin::User;
 ## no critic(RequireUseStrict,RequireUseWarnings)
 {
-    $LIMS2::Model::Plugin::User::VERSION = '0.033';
+    $LIMS2::Model::Plugin::User::VERSION = '0.034';
 }
 ## use critic
 

diff --git a/lib/LIMS2/Model/Plugin/Well.pm b/lib/LIMS2/Model/Plugin/Well.pm
@@ -1,7 +1,7 @@
 package LIMS2::Model::Plugin::Well;
 ## no critic(RequireUseStrict,RequireUseWarnings)
 {
-    $LIMS2::Model::Plugin::Well::VERSION = '0.033';
+    $LIMS2::Model::Plugin::Well::VERSION = '0.034';
 }
 ## use critic
 

diff --git a/lib/LIMS2/Model/ProcessGraph.pm b/lib/LIMS2/Model/ProcessGraph.pm
@@ -1,7 +1,7 @@
 package LIMS2::Model::ProcessGraph;
 ## no critic(RequireUseStrict,RequireUseWarnings)
 {
-    $LIMS2::Model::ProcessGraph::VERSION = '0.033';
+    $LIMS2::Model::ProcessGraph::VERSION = '0.034';
 }
 ## use critic
 

diff --git a/lib/LIMS2/Model/Schema.pm b/lib/LIMS2/Model/Schema.pm
@@ -2,7 +2,7 @@ use utf8;
 package LIMS2::Model::Schema;
 ## no critic(RequireUseStrict,RequireUseWarnings)
 {
-    $LIMS2::Model::Schema::VERSION = '0.033';
+    $LIMS2::Model::Schema::VERSION = '0.034';
 }
 ## use critic
 

diff --git a/lib/LIMS2/Model/Schema/Result/Assembly.pm b/lib/LIMS2/Model/Schema/Result/Assembly.pm
@@ -2,7 +2,7 @@ use utf8;
 package LIMS2::Model::Schema::Result::Assembly;
 ## no critic(RequireUseStrict,RequireUseWarnings)
 {
-    $LIMS2::Model::Schema::Result::Assembly::VERSION = '0.033';
+    $LIMS2::Model::Schema::Result::Assembly::VERSION = '0.034';
 }
 ## use critic
 

diff --git a/lib/LIMS2/Model/Schema/Result/BacClone.pm b/lib/LIMS2/Model/Schema/Result/BacClone.pm
@@ -2,7 +2,7 @@ use utf8;
 package LIMS2::Model::Schema::Result::BacClone;
 ## no critic(RequireUseStrict,RequireUseWarnings)
 {
-    $LIMS2::Model::Schema::Result::BacClone::VERSION = '0.033';
+    $LIMS2::Model::Schema::Result::BacClone::VERSION = '0.034';
 }
 ## use critic
 

diff --git a/lib/LIMS2/Model/Schema/Result/BacCloneLocus.pm b/lib/LIMS2/Model/Schema/Result/BacCloneLocus.pm
@@ -2,7 +2,7 @@ use utf8;
 package LIMS2::Model::Schema::Result::BacCloneLocus;
 ## no critic(RequireUseStrict,RequireUseWarnings)
 {
-    $LIMS2::Model::Schema::Result::BacCloneLocus::VERSION = '0.033';
+    $LIMS2::Model::Schema::Result::BacCloneLocus::VERSION = '0.034';
 }
 ## use critic
 

diff --git a/lib/LIMS2/Model/Schema/Result/BacLibrary.pm b/lib/LIMS2/Model/Schema/Result/BacLibrary.pm
@@ -2,7 +2,7 @@ use utf8;
 package LIMS2::Model::Schema::Result::BacLibrary;
 ## no critic(RequireUseStrict,RequireUseWarnings)
 {
-    $LIMS2::Model::Schema::Result::BacLibrary::VERSION = '0.033';
+    $LIMS2::Model::Schema::Result::BacLibrary::VERSION = '0.034';
 }
 ## use critic
 

diff --git a/lib/LIMS2/Model/Schema/Result/Backbone.pm b/lib/LIMS2/Model/Schema/Result/Backbone.pm
@@ -2,7 +2,7 @@ use utf8;
 package LIMS2::Model::Schema::Result::Backbone;
 ## no critic(RequireUseStrict,RequireUseWarnings)
 {
-    $LIMS2::Model::Schema::Result::Backbone::VERSION = '0.033';
+    $LIMS2::Model::Schema::Result::Backbone::VERSION = '0.034';
 }
 ## use critic
 

diff --git a/lib/LIMS2/Model/Schema/Result/CachedReport.pm b/lib/LIMS2/Model/Schema/Result/CachedReport.pm
@@ -2,7 +2,7 @@ use utf8;
 package LIMS2::Model::Schema::Result::CachedReport;
 ## no critic(RequireUseStrict,RequireUseWarnings)
 {
-    $LIMS2::Model::Schema::Result::CachedReport::VERSION = '0.033';
+    $LIMS2::Model::Schema::Result::CachedReport::VERSION = '0.034';
 }
 ## use critic
 

diff --git a/lib/LIMS2/Model/Schema/Result/Cassette.pm b/lib/LIMS2/Model/Schema/Result/Cassette.pm
@@ -2,7 +2,7 @@ use utf8;
 package LIMS2::Model::Schema::Result::Cassette;
 ## no critic(RequireUseStrict,RequireUseWarnings)
 {
-    $LIMS2::Model::Schema::Result::Cassette::VERSION = '0.033';
+    $LIMS2::Model::Schema::Result::Cassette::VERSION = '0.034';
 }
 ## use critic
 

diff --git a/lib/LIMS2/Model/Schema/Result/CellLine.pm b/lib/LIMS2/Model/Schema/Result/CellLine.pm
@@ -2,7 +2,7 @@ use utf8;
 package LIMS2::Model::Schema::Result::CellLine;
 ## no critic(RequireUseStrict,RequireUseWarnings)
 {
-    $LIMS2::Model::Schema::Result::CellLine::VERSION = '0.033';
+    $LIMS2::Model::Schema::Result::CellLine::VERSION = '0.034';
 }
 ## use critic
 

diff --git a/lib/LIMS2/Model/Schema/Result/Chromosome.pm b/lib/LIMS2/Model/Schema/Result/Chromosome.pm
@@ -2,7 +2,7 @@ use utf8;
 package LIMS2::Model::Schema::Result::Chromosome;
 ## no critic(RequireUseStrict,RequireUseWarnings)
 {
-    $LIMS2::Model::Schema::Result::Chromosome::VERSION = '0.033';
+    $LIMS2::Model::Schema::Result::Chromosome::VERSION = '0.034';
 }
 ## use critic
 

diff --git a/lib/LIMS2/Model/Schema/Result/ColonyCountType.pm b/lib/LIMS2/Model/Schema/Result/ColonyCountType.pm
@@ -2,7 +2,7 @@ use utf8;
 package LIMS2::Model::Schema::Result::ColonyCountType;
 ## no critic(RequireUseStrict,RequireUseWarnings)
 {
-    $LIMS2::Model::Schema::Result::ColonyCountType::VERSION = '0.033';
+    $LIMS2::Model::Schema::Result::ColonyCountType::VERSION = '0.034';
 }
 ## use critic
 

diff --git a/lib/LIMS2/Model/Schema/Result/DefaultDesignOligoLocus.pm b/lib/LIMS2/Model/Schema/Result/DefaultDesignOligoLocus.pm
@@ -1,7 +1,7 @@
 package LIMS2::Model::Schema::Result::DefaultDesignOligoLocus;
 ## no critic(RequireUseStrict,RequireUseWarnings)
 {
-    $LIMS2::Model::Schema::Result::DefaultDesignOligoLocus::VERSION = '0.033';
+    $LIMS2::Model::Schema::Result::DefaultDesignOligoLocus::VERSION = '0.034';
 }
 ## use critic
 

diff --git a/lib/LIMS2/Model/Schema/Result/Design.pm b/lib/LIMS2/Model/Schema/Result/Design.pm
@@ -2,7 +2,7 @@ use utf8;
 package LIMS2::Model::Schema::Result::Design;
 ## no critic(RequireUseStrict,RequireUseWarnings)
 {
-    $LIMS2::Model::Schema::Result::Design::VERSION = '0.033';
+    $LIMS2::Model::Schema::Result::Design::VERSION = '0.034';
 }
 ## use critic
 

diff --git a/lib/LIMS2/Model/Schema/Result/DesignComment.pm b/lib/LIMS2/Model/Schema/Result/DesignComment.pm
@@ -2,7 +2,7 @@ use utf8;
 package LIMS2::Model::Schema::Result::DesignComment;
 ## no critic(RequireUseStrict,RequireUseWarnings)
 {
-    $LIMS2::Model::Schema::Result::DesignComment::VERSION = '0.033';
+    $LIMS2::Model::Schema::Result::DesignComment::VERSION = '0.034';
 }
 ## use critic
 

diff --git a/lib/LIMS2/Model/Schema/Result/DesignCommentCategory.pm b/lib/LIMS2/Model/Schema/Result/DesignCommentCategory.pm
@@ -2,7 +2,7 @@ use utf8;
 package LIMS2::Model::Schema::Result::DesignCommentCategory;
 ## no critic(RequireUseStrict,RequireUseWarnings)
 {
-    $LIMS2::Model::Schema::Result::DesignCommentCategory::VERSION = '0.033';
+    $LIMS2::Model::Schema::Result::DesignCommentCategory::VERSION = '0.034';
 }
 ## use critic
 

diff --git a/lib/LIMS2/Model/Schema/Result/DesignOligo.pm b/lib/LIMS2/Model/Schema/Result/DesignOligo.pm
@@ -2,7 +2,7 @@ use utf8;
 package LIMS2::Model::Schema::Result::DesignOligo;
 ## no critic(RequireUseStrict,RequireUseWarnings)
 {
-    $LIMS2::Model::Schema::Result::DesignOligo::VERSION = '0.033';
+    $LIMS2::Model::Schema::Result::DesignOligo::VERSION = '0.034';
 }
 ## use critic
 

diff --git a/lib/LIMS2/Model/Schema/Result/DesignOligoLocus.pm b/lib/LIMS2/Model/Schema/Result/DesignOligoLocus.pm
@@ -2,7 +2,7 @@ use utf8;
 package LIMS2::Model::Schema::Result::DesignOligoLocus;
 ## no critic(RequireUseStrict,RequireUseWarnings)
 {
-    $LIMS2::Model::Schema::Result::DesignOligoLocus::VERSION = '0.033';
+    $LIMS2::Model::Schema::Result::DesignOligoLocus::VERSION = '0.034';
 }
 ## use critic