TISnet

Translation Initiation Site prediction using deep neural network

This model was designed by adapting the PrismNet model

Table of Contents

• Getting started
• Usage

Getting started

Requirements

• Python 3.6
• PyTorch 1.1.0, with NVIDIA CUDA Support
• pip

Installation

Install packages:

cd TISnet
pip install -r requirements.txt
pip install -e .

Usage

Training

For the TISnet model training, evaluation, and inference, Users can use the bash scripts in exp/tisnet/

Motif Construction

For the structure element identification, Users can use the scripts in structure_element_analysis