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Performance issues on windows #2

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GJiananChen opened this issue Jun 24, 2024 · 0 comments
Open

Performance issues on windows #2

GJiananChen opened this issue Jun 24, 2024 · 0 comments

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@GJiananChen
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Dear Zhi,

Thank you for sharing this amazing work! I have installed the repo following your instructions and was able to reproduce you showed in the YT video with the provided experimental data.

However, I run into the following problems when I was playing around with the tool.

  1. Stuck at 0/108 while running feature_pre-calculation/main.py
 2024-06-24 15:42:17.299282: I tensorflow/core/util/port.cc:113] oneDNN custom operations are on. You may see slightly different numerical results due to floating-point round-off errors from different computation orders. To turn them off, set the environment variable `TF_ENABLE_ONEDNN_OPTS=0`.
2024-06-24 15:42:19.940113: I tensorflow/core/util/port.cc:113] oneDNN custom operations are on. You may see slightly different numerical results due to floating-point round-off errors from different computation orders. To turn them off, set the environment variable `TF_ENABLE_ONEDNN_OPTS=0`.
Working on example_data/CMU_Aperio/CMU-1/CMU-1.svs ...
Read data ... 15:42:26
Found model '2D_versatile_he' for 'StarDist2D'.
2024-06-24 15:42:28.555373: I tensorflow/core/platform/cpu_feature_guard.cc:210] This TensorFlow binary is optimized to use available CPU instructions in performance-critical operations.
To enable the following instructions: AVX2 AVX_VNNI FMA, in other operations, rebuild TensorFlow with the appropriate compiler flags.
Loading network weights from 'weights_best.h5'.
Loading thresholds from 'thresholds.json'.
Using default values: prob_thresh=0.692478, nms_thresh=0.3.
  0%|                                                                                                                                                                                     | 0/108 [00:00<?, ?it/s]
  1. WebGL performance penalty caused by 'Attribute 0 is disabled' throughout running software/main.py.
  2. js Uncaught Type errors when I press 'review annotations and active learning' when running software/main.py
js: [.WebGL-000002499377ACC0]PERFORMANCE WARNING: Attribute 0 is disabled. This has significant performance penalty
[20288:40308:0624/151953.455:ERROR:gles2_cmd_decoder.cc(10989)] [.WebGL-000002499377ACC0]PERFORMANCE WARNING: Attribute 0 is disabled. This has significant performance penalty
js: [.WebGL-000002499377ACC0]PERFORMANCE WARNING: Attribute 0 is disabled. This has significant performance penalty
js: [.WebGL-000002499377ACC0]PERFORMANCE WARNING: Attribute 0 is disabled. This has significant performance penalty
Review annotations and active learning
window.onload
100%|███████████████████████████████████████████████████████████████████████████| 17991/17991 [00:41<00:00, 437.02it/s]
pressImage
left click
pressImage
left click
js: Uncaught TypeError: backend.click_VFC_plot is not a function
js: Uncaught TypeError: $(...).DataTable is not a function

I'm running the software on a Windows 11 machine with a 12th Gen Intel(R) Core(TM) i7-12700H 2.30 GHz CPU and a NVIDIA RTX A2000 8GB Laptop GPU.

Thanks,
Jianan

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