You signed in with another tab or window. Reload to refresh your session.You signed out in another tab or window. Reload to refresh your session.You switched accounts on another tab or window. Reload to refresh your session.Dismiss alert
Thank you for sharing this amazing work! I have installed the repo following your instructions and was able to reproduce you showed in the YT video with the provided experimental data.
However, I run into the following problems when I was playing around with the tool.
Stuck at 0/108 while running feature_pre-calculation/main.py
2024-06-24 15:42:17.299282: I tensorflow/core/util/port.cc:113] oneDNN custom operations are on. You may see slightly different numerical results due to floating-point round-off errors from different computation orders. To turn them off, set the environment variable `TF_ENABLE_ONEDNN_OPTS=0`.
2024-06-24 15:42:19.940113: I tensorflow/core/util/port.cc:113] oneDNN custom operations are on. You may see slightly different numerical results due to floating-point round-off errors from different computation orders. To turn them off, set the environment variable `TF_ENABLE_ONEDNN_OPTS=0`.
Working on example_data/CMU_Aperio/CMU-1/CMU-1.svs ...
Read data ... 15:42:26
Found model '2D_versatile_he' for 'StarDist2D'.
2024-06-24 15:42:28.555373: I tensorflow/core/platform/cpu_feature_guard.cc:210] This TensorFlow binary is optimized to use available CPU instructions in performance-critical operations.
To enable the following instructions: AVX2 AVX_VNNI FMA, in other operations, rebuild TensorFlow with the appropriate compiler flags.
Loading network weights from 'weights_best.h5'.
Loading thresholds from 'thresholds.json'.
Using default values: prob_thresh=0.692478, nms_thresh=0.3.
0%| | 0/108 [00:00<?, ?it/s]
WebGL performance penalty caused by 'Attribute 0 is disabled' throughout running software/main.py.
js Uncaught Type errors when I press 'review annotations and active learning' when running software/main.py
js: [.WebGL-000002499377ACC0]PERFORMANCE WARNING: Attribute 0 is disabled. This has significant performance penalty
[20288:40308:0624/151953.455:ERROR:gles2_cmd_decoder.cc(10989)] [.WebGL-000002499377ACC0]PERFORMANCE WARNING: Attribute 0 is disabled. This has significant performance penalty
js: [.WebGL-000002499377ACC0]PERFORMANCE WARNING: Attribute 0 is disabled. This has significant performance penalty
js: [.WebGL-000002499377ACC0]PERFORMANCE WARNING: Attribute 0 is disabled. This has significant performance penalty
Review annotations and active learning
window.onload
100%|███████████████████████████████████████████████████████████████████████████| 17991/17991 [00:41<00:00, 437.02it/s]
pressImage
left click
pressImage
left click
js: Uncaught TypeError: backend.click_VFC_plot is not a function
js: Uncaught TypeError: $(...).DataTable is not a function
I'm running the software on a Windows 11 machine with a 12th Gen Intel(R) Core(TM) i7-12700H 2.30 GHz CPU and a NVIDIA RTX A2000 8GB Laptop GPU.
Thanks,
Jianan
The text was updated successfully, but these errors were encountered:
Dear Zhi,
Thank you for sharing this amazing work! I have installed the repo following your instructions and was able to reproduce you showed in the YT video with the provided experimental data.
However, I run into the following problems when I was playing around with the tool.
I'm running the software on a Windows 11 machine with a 12th Gen Intel(R) Core(TM) i7-12700H 2.30 GHz CPU and a NVIDIA RTX A2000 8GB Laptop GPU.
Thanks,
Jianan
The text was updated successfully, but these errors were encountered: