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Update/fork to handle PhenoCycler (+Fusion) #45

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mruffalo opened this issue Oct 11, 2023 · 1 comment
Open

Update/fork to handle PhenoCycler (+Fusion) #45

mruffalo opened this issue Oct 11, 2023 · 1 comment
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@NickEngland

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@mruffalo
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mruffalo commented Oct 11, 2023 •
edited by NickEngland
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The "CODEX v2" data layout significantly differs from what we've handled in the past. Using sample data from various groups, investigate what will need to be modified in our code to handle PhenoCycler data.

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@NickEngland NickEngland self-assigned this Nov 1, 2023
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I've so far fixed the problem with running cwltool with singularity on the hive:
hubmapconsortium/cwltool#29
which was blocking me from testing the pipeline with the data.

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