ingest-validation-tests

This repository contains plug-in tests for use during validation of submissions. It is referenced by ingest-validation-tools.

Development process

Branches

• Make new feature branches from devel.

• Before submitting a PR, make sure your code is black, isort, and flake8 compliant. Run the following from the base ingest-validation-tests directory:

  black --line-length 99 .
  isort --profile black --multi-line 3 .
  flake8
  

  (Integrating black and potentially isort/flake8 with your editor may allow you to skip this step, see Setup section below.)

• Make PRs to devel. (This is the default branch.)

• The last reviewer to approve a PR should merge it.

Setup

• Creating and activating a virtual environment is recommended. These instructions assume you are using a virtual environment. Example using venv:

  python3.9 -m venv hm-ingest-validation-tests
  source hm-ingest-validation-tests/bin/activate
  

• Run pip install -r requirements-dev.txt

• (optional) Integrate black with your editor.

  • Instructions for black.

• (optional) Integrate isort with your editor.

• (optional) Integrate flake8 with your editor.

Testing

• If ingest-validation-tools is not already set up:

  # Starting from ingest-validation-tests...
  cd ..
  git clone https://github.com/hubmapconsortium/ingest-validation-tools.git
  cd ingest-validation-tests
  pip install -r ../ingest-validation-tools/requirements.txt
  pip install -r ../ingest-validation-tools/requirements-dev.txt
  

• If ingest-validation-tools is already set up, add the appropriate ingest-validation-tools path and run:

  pip install -r <path-to-ingest-validation-tools>/requirements.txt
  pip install -r <path-to-ingest-validation-tools>/requirements-dev.txt
  

• Run test.sh