regDriver

regDriver to detect functional somatic mutaionts

Required tools and modules

The following packages are required to run the regDriver method:

• Python 2.7: we recommend installing it from anaconda.com
• bedtools v25.9
• pybedtools (v0.7.8): for processing the annotation data files (e.g. conda install pybedtools=0.7.8 -c bioconda)
• The following python packages are also required to run the helper modules:
  • requests
  • userlib
  • numpy

Run the regDriver

python regDriver.py regDriver_params.conf


A copy of the regDriver_params.conf file that contains all parameters and options for the file can be found above