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1.1_Data_quality_control
1.1_Data_quality_control
 
 
1.2_Imputation_array_data
1.2_Imputation_array_data
 
 
2_GWSS_&_meta-analysis
2_GWSS_&_meta-analysis
 
 
3_Candidate_Gene_Analysis
3_Candidate_Gene_Analysis
 
 
4_Conditional_analysis
4_Conditional_analysis
 
 
5.1_Coloc_PsychEncode.eQTLGen.Rmd
5.1_Coloc_PsychEncode.eQTLGen.Rmd
 
 
5.2_RegionalPlots_eQTL_tQTL.Rmd
5.2_RegionalPlots_eQTL_tQTL.Rmd
 
 
5.3_sQTL_gtexV8_cortex.Rmd
5.3_sQTL_gtexV8_cortex.Rmd
 
 
6_Power_calculations
6_Power_calculations
 
 
7_Genetic_risk_scores
7_Genetic_risk_scores
 
 
Heterozigosity.R
Heterozigosity.R
 
 
MAKE_GWASscript.sh
MAKE_GWASscript.sh
 
 
MANHATTAN_PLOT.R
MANHATTAN_PLOT.R
 
 
MetalScript.R
MetalScript.R
 
 
PC_EUR.R
PC_EUR.R
 
 
PostMetalScript.R
PostMetalScript.R
 
 
README.md
README.md
 
 
Remove_Palindromes.R
Remove_Palindromes.R
 
 
bcftools_script.sh
bcftools_script.sh
 
 
checkRelatedness.R
checkRelatedness.R
 
 
chunkCreator.sh
chunkCreator.sh
 
 
columncutter.py
columncutter.py
 
 
makecxphshellscript.sh
makecxphshellscript.sh
 
 
merge.sh
merge.sh
 
 
metaanalysis_script.txt
metaanalysis_script.txt
 
 

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PDD_GWSS

Code used in the analysis from the manuscript Real et al., Association between the LRP1B and APOE loci and the development of Parkinson’s disease dementia (2022)

Repo by Raquel Real

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v1.1 Latest
May 10, 2022
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