Integration tests #1724
Workflow file for this run
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| name: Integration tests | |
| on: | |
| workflow_dispatch: | |
| workflow: "*" | |
| pull_request_review: | |
| types: [submitted, edited] | |
| pull_request: | |
| types: [labeled, ready_for_review, reopened] | |
| jobs: | |
| integration_test: | |
| if: ${{ contains(github.event.pull_request.labels.*.name, 'run-extension-tests') || github.event_name == 'workflow_dispatch' }} | |
| name: Extension_${{ matrix.EXTENSION_VERSION }} | |
| runs-on: ubuntu-latest | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| #EXTENSION_VERSION: ['release', 'dev'] | |
| EXTENSION_VERSION: ['dev'] | |
| env: | |
| MPLBACKEND: agg | |
| EXTENSION: kikuchipy lumispy pyxem atomap | |
| TEST_DEPS: pytest pytest-xdist pytest-rerunfailures pytest-instafail | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| miniforge-variant: Mambaforge | |
| miniforge-version: latest | |
| # use base environment, so that when using pip, this is from the | |
| # mambaforge distribution | |
| auto-activate-base: true | |
| activate-environment: "" | |
| - name: Conda info | |
| run: | | |
| conda info | |
| conda list | |
| - name: Install extensions and Test dependencies | |
| run: | | |
| mamba install hyperspy-base ${{ env.EXTENSION }} ${{ env.TEST_DEPS }} | |
| - name: Conda list | |
| run: | | |
| conda list | |
| - name: Install HyperSpy | |
| run: | | |
| pip install . | |
| - name: Install Extension Dev | |
| if: contains(matrix.EXTENSION_VERSION, 'dev') | |
| run: | | |
| pip install https://github.com/lumispy/lumispy/archive/main.zip | |
| pip install https://github.com/pyxem/kikuchipy/archive/develop.zip | |
| pip install https://github.com/pyxem/pyxem/archive/main.zip | |
| pip install https://gitlab.com/atomap/atomap/-/archive/master/atomap-master.zip | |
| pip install https://github.com/hyperspy/holospy/archive/main.zip | |
| pip install https://github.com/hyperspy/exspy/archive/main.zip | |
| - name: Install xvfb | |
| run: | | |
| # required for running kikuchipy test suite | |
| sudo apt-get install xvfb | |
| - name: Run Kikuchipy Test Suite | |
| if: ${{ always() }} | |
| run: | | |
| # Virtual buffer (xvfb) required for tests using PyVista | |
| sudo apt-get install xvfb | |
| xvfb-run python -m pytest --pyargs kikuchipy | |
| - name: Run LumiSpy Test Suite | |
| if: ${{ always() }} | |
| run: | | |
| python -m pytest --pyargs lumispy | |
| - name: Run Pyxem Test Suite | |
| if: ${{ always() }} | |
| run: | | |
| python -m pytest --pyargs pyxem | |
| - name: Run holospy Test Suite | |
| if: ${{ always() }} | |
| run: | | |
| python -m pytest --pyargs holospy | |
| - name: Run exSpy Test Suite | |
| if: ${{ always() }} | |
| run: | | |
| python -m pytest --pyargs exspy | |
| # The currently released version of Atomap (0.3.1) does not work with this test | |
| # environment. Thus, only the dev version is currently tested. If a newer version | |
| # of Atomap is released, the "if" can be changed to always(). | |
| - name: Run atomap Test Suite | |
| if: contains(matrix.EXTENSION_VERSION, 'dev') | |
| run: | | |
| python -m pytest --pyargs atomap |