Merge pull request #2911 from sem-geologist/patch-4

expose Stage metadata for sem images in bruker BCF
hyperspy · Mar 26, 2022 · c8f8325 · c8f8325
2 parents 6e2ddbb + 21cd324
commit c8f8325
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diff --git a/hyperspy/io_plugins/bruker.py b/hyperspy/io_plugins/bruker.py
@@ -872,7 +872,8 @@ def gen_hspy_item_dict_basic(self):
                  'Microscope': self.sem_metadata,
                  'DSP Configuration': self.dsp_metadata,
                  'Stage': self.stage_metadata
-        }
+        },
+             'mapping': get_mapping(self.mode)
         }
         return i
 

diff --git a/hyperspy/tests/io/test_bruker.py b/hyperspy/tests/io/test_bruker.py
@@ -38,6 +38,8 @@ def test_load_16bit():
     np.testing.assert_array_equal(hype.data[:, :, 222:224],
                                   np.load(np_filename))
     assert hype.data.shape == (30, 30, 2048)
+    assert bse.metadata.get_item('Stage.x', full_path=False) == 66940.81
+    assert hype.metadata.get_item('Stage.x', full_path=False) == 66940.81
 
 
 def test_load_16bit_reduced():

diff --git a/upcoming_changes/2911.enhancements.rst b/upcoming_changes/2911.enhancements.rst
@@ -0,0 +1 @@
+expose Stage coordinates and rotation angle in metada for sem images in bcf reader.