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IPywidgets UI #1544
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francisco-dlp
merged 296 commits into
hyperspy:RELEASE_next_minor
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francisco-dlp:ipywidgets
May 24, 2017
Merged
IPywidgets UI #1544
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c257f26
Add display argument to all ipywidgets
francisco-dlp d639999
Automatic style corrections courtesy of autopep8
francisco-dlp 3b86cba
Fix display default
francisco-dlp e98ec41
Register axesmanager and preferences
francisco-dlp 995c8be
Automatic style corrections courtesy of autopep8
francisco-dlp ff0dc66
Rename gui decorator -> add_gui_method
francisco-dlp 4ac94c1
Automatic style corrections courtesy of autopep8
francisco-dlp be1fbb8
Register nav sliders and add kwargs to all widgets
francisco-dlp fe5d65d
Automatic style corrections courtesy of autopep8
francisco-dlp e14d0b8
Add model and components
francisco-dlp f63d6be
Automatic style corrections courtesy of autopep8
francisco-dlp 8c65b83
Connect all ipywidgets, some things still broken
francisco-dlp c4d7f30
Automatic style corrections courtesy of autopep8
francisco-dlp d417b85
Fix positional arg in wrapped function
francisco-dlp f66e9f2
Fix model widgets
francisco-dlp e5c49e8
Automatic style corrections courtesy of autopep8
francisco-dlp bb15e9a
Bidirectional component active
francisco-dlp e41f3dd
Fix fit component
francisco-dlp b077597
Fix setting wrong qt version in traitsui
francisco-dlp 71c52f6
Add gui_traitsui module (mainly empty still)
francisco-dlp a4c75f0
Move traitsui functionality to gui_traitsui (WIP)
francisco-dlp 780ecb2
Automatic style corrections courtesy of autopep8
francisco-dlp b6c8bbc
Move traits set micro par to the signal files.
francisco-dlp e38dd18
Automatic style corrections courtesy of autopep8
francisco-dlp ee7d694
Enable traitsui preferences
francisco-dlp 0ec9fcc
Add navigation sliders
francisco-dlp faeb98b
Automatic style corrections courtesy of autopep8
francisco-dlp 09f0de1
Fix add_display not removing display from kwargs
francisco-dlp e07a6f2
Fix wrong import path
francisco-dlp 7fd2b06
Set step of ipywidgets nav slider value
francisco-dlp d0936db
Add AxesManager traitsui gui
francisco-dlp bfb1917
Automatic style corrections courtesy of autopep8
francisco-dlp 2b1a974
Add Model1D.fit_component traitsui gui
francisco-dlp f6114ef
Automatic style corrections courtesy of autopep8
francisco-dlp eb336f5
Make traitsui optional
francisco-dlp ba46508
Enable all tools traitsui elements
francisco-dlp 411de16
Automatic style corrections courtesy of autopep8
francisco-dlp a975824
Fix typo
francisco-dlp a4c17f4
Register traitsui and ipywidgets only if traitsui/ipywidgets installed
francisco-dlp aef40d7
Automatic style corrections courtesy of autopep8
francisco-dlp b5ab2db
Add set_microscope_parameters traitsui gui
francisco-dlp f04befd
Automatic style corrections courtesy of autopep8
francisco-dlp 822fa7f
Enable messages for traitsui
francisco-dlp 68a34f4
Automatic style corrections courtesy of autopep8
francisco-dlp 4283014
Move egerton_quantification to tools
francisco-dlp 48b0d60
Automatic style corrections courtesy of autopep8
francisco-dlp 42c2bc0
Move what was left of hyperspy.gui to hyperspy.signal_tools
francisco-dlp 6e4c3ba
Add progress bar to ipywidget spikes_removal_tool
francisco-dlp 5845a4d
Add message traitsui to spikes_removal_tool
francisco-dlp 470e9d6
Automatic style corrections courtesy of autopep8
francisco-dlp a49b539
Fix label length issue
francisco-dlp ac14440
Add option to disable continous update in nav sliders
francisco-dlp 851e84d
Use gui decorator where possible and add missing butteworth gui
francisco-dlp a793785
Automatic style corrections courtesy of autopep8
francisco-dlp 3106463
Add option to disable GUIs in preferences
francisco-dlp 7ff0f36
Add toolkit and display parameters
francisco-dlp 2c4d10d
Automatic style corrections courtesy of autopep8
francisco-dlp 238ee12
signal_range parameter takes SpanROI
francisco-dlp 7f5ba2e
Automatic style corrections courtesy of autopep8
francisco-dlp 23f4b0d
Fix toolkit selection
francisco-dlp 8251534
Add ipywidgets roi ui
francisco-dlp 2420bca
Automatic style corrections courtesy of autopep8
francisco-dlp 49c2dc2
Add apply method to butterworth filter
francisco-dlp 47e48db
Automatic style corrections courtesy of autopep8
francisco-dlp fd80998
Add apply and cancel buttoms to smoothers
francisco-dlp 3a036bc
Automatic style corrections courtesy of autopep8
francisco-dlp 85290be
Add apply method to lowess
francisco-dlp b03c7e6
Automatic style corrections courtesy of autopep8
francisco-dlp 11179d0
Close remove background widget on apply
francisco-dlp f463db1
Automatic style corrections courtesy of autopep8
francisco-dlp 2da61b6
Add missing import
francisco-dlp a875894
Fix typo
francisco-dlp 109009c
Conditional color attribute
francisco-dlp b266178
Automatic style corrections courtesy of autopep8
francisco-dlp f536636
Move message to warning
francisco-dlp 49f77d0
Automatic style corrections courtesy of autopep8
francisco-dlp 0c29cde
Improve warning message
francisco-dlp 7351366
More useful messages for gui is not available.
francisco-dlp 771b265
Fix len > 1 parameter value gui
francisco-dlp b853025
Put multivalue parameters inside accordion
francisco-dlp a7a320e
Add update button to multivalue parameter widget
francisco-dlp 26fbdb0
Automatic style corrections courtesy of autopep8
francisco-dlp 0f7e446
Fix missing import
francisco-dlp 0bb701d
Change behaviour of auto slider bounds
francisco-dlp 8c7507e
Add axis ipy gui
francisco-dlp bc17182
Automatic style corrections courtesy of autopep8
francisco-dlp 514d914
Add dataaxis traitsui gui and improve axis layout
francisco-dlp e1ea66f
Deprecate AxesManager.show
francisco-dlp 7d3092d
Deprecate integrate_in_range
francisco-dlp 2f1dae1
Automatic style corrections courtesy of autopep8
francisco-dlp cfa2cf9
More helpful error message when missing beam energy for EDS model
francisco-dlp f000628
Don't register traitsui widgets when toolkit is null
francisco-dlp 7da9c9e
Try to set the qt5 backend to be ready for when traitsui supports it
francisco-dlp 395d667
Automatic style corrections courtesy of autopep8
francisco-dlp 3dd95bd
Add method
francisco-dlp d486e35
Automatic style corrections courtesy of autopep8
francisco-dlp 0e161b5
Add string_to_html function to convert "\n" to "<br/>" in ipywidgets.…
ericpre a02096c
link ipywidgets value step to axis scale
francisco-dlp a2df9ba
Don't display index and value for signal axes in ipywidgets
francisco-dlp 917a80a
conversion more explicit.
ericpre 016e813
Raise value error when requestion non registered toolkit
francisco-dlp 2fbd53b
Automatic style corrections courtesy of autopep8
francisco-dlp be04648
Add gui folders to setup.py
francisco-dlp 06d38f9
Catch error when requestion plot with sliders.
francisco-dlp 62715fe
Better error message
francisco-dlp 7cb0269
_ -> space
francisco-dlp 764673f
Fix disabling traitsui in preferences
francisco-dlp 66d69de
Fix setting nbagg backend (thanks @thomasaarholt)
francisco-dlp ca5bf64
Merge pull request #35 from ericpre/improve_formatting_help_spikes_re…
francisco-dlp 57250b3
Make set_microscope_parameters behave as described in docstring
francisco-dlp baea513
Automatic style corrections courtesy of autopep8
francisco-dlp 92130df
Add ipywidgets set_microscope_parameters UI
francisco-dlp 053f668
Automatic style corrections courtesy of autopep8
francisco-dlp fc26a2b
Fix updating traitlets from traits when back to Undefined
francisco-dlp c8d60e6
Merge branch 'ipywidgets' of https://github.com/francisco-dlp/hypersp…
francisco-dlp 0e70e5b
Add display and toolkit kwargs to set_microscope_parameters
francisco-dlp 54996fa
Automatic style corrections courtesy of autopep8
francisco-dlp c3537f8
Fix TypeError in SpikesRemoval (thanks @thomasaarholt)
francisco-dlp 69c0ed7
Automatic style corrections courtesy of autopep8
francisco-dlp ffa8fd7
Don't use floatslider for nav sliders and add units (thanks @thomasaa…
francisco-dlp f7390e4
Fix ipywidgets preferences gui
francisco-dlp e095fed
Automatic style corrections courtesy of autopep8
francisco-dlp 2447c91
Add save button to traitsui preferences and don't save on close
francisco-dlp c2330b6
Update coveragerc
francisco-dlp fd65242
Add axes ipywidgets tests
francisco-dlp 6df1674
Automatic style corrections courtesy of autopep8
francisco-dlp 28f66a9
Automatic style corrections courtesy of autopep8
francisco-dlp 6d8fa8f
Add ipywidgets set micro par test
francisco-dlp 9d38911
Automatic style corrections courtesy of autopep8
francisco-dlp 9ad8d10
Fix display
francisco-dlp a01ea76
Fix EELSCLEdge ipywidget and add wdict to model widgets
francisco-dlp e925b9a
Automatic style corrections courtesy of autopep8
francisco-dlp 0c1c234
Add wdict to preferences
francisco-dlp 8873a6c
Automatic style corrections courtesy of autopep8
francisco-dlp 0ecec5a
Add wdict to roi ipywidgets
francisco-dlp 439f161
Automatic style corrections courtesy of autopep8
francisco-dlp cd7ce31
Disable traitsui line_color
francisco-dlp a5d3da8
Automatic style corrections courtesy of autopep8
francisco-dlp 56bc7eb
Add wdict to ipywidgets tools
francisco-dlp c868be1
Automatic style corrections courtesy of autopep8
francisco-dlp 0ad6a4b
Merge remote-tracking branch 'upstream/RELEASE_next_patch' into ipywi…
francisco-dlp c521f00
Merge remote-tracking branch 'upstream/RELEASE_next_minor' into ipywi…
francisco-dlp d3908bf
New directional_link
francisco-dlp 899f715
Automatic style corrections courtesy of autopep8
francisco-dlp 4c0ee02
Add parameter test
francisco-dlp 457d4b1
dlink bmin, bmax with widget
francisco-dlp 9a9e10b
Add component test
francisco-dlp 83043f8
Automatic style corrections courtesy of autopep8
francisco-dlp 58d0aeb
Add model test
francisco-dlp 7d46457
Automatic style corrections courtesy of autopep8
francisco-dlp 256cb68
Add multivalue par test
francisco-dlp 1372efa
Automatic style corrections courtesy of autopep8
francisco-dlp 35dff0d
Add EELSCLEdge ipywidgets test and fix bug
francisco-dlp 0de90b2
Automatic style corrections courtesy of autopep8
francisco-dlp 21faea2
Automatic style corrections courtesy of autopep8
francisco-dlp 9523fbd
Add fit_component test
francisco-dlp 6309cbe
Automatic style corrections courtesy of autopep8
francisco-dlp 9bb6e3d
Remove unnecessary com mock
francisco-dlp cff0a29
Fix calibrate and add tests
francisco-dlp 8bcd469
Automatic style corrections courtesy of autopep8
francisco-dlp e2db463
Remove obsolate test
francisco-dlp 2a936bb
Add smoothers ipywidget tests
francisco-dlp f6d9a0d
Automatic style corrections courtesy of autopep8
francisco-dlp 470371a
Don't set ETS toolkit when already set and improve msgs
francisco-dlp 69e740c
Remove duplicated debug msg
francisco-dlp c246dfd
Fix filter_butterworth
francisco-dlp 1e74620
Automatic style corrections courtesy of autopep8
francisco-dlp c591d2d
Add background test and fix bug in polynomial bg removal
francisco-dlp 9c37a8d
Automatic style corrections courtesy of autopep8
francisco-dlp 2c9462e
Merge remote-tracking branch 'upstream/RELEASE_next_minor' into ipywi…
francisco-dlp 67f5cbf
Automatic style corrections courtesy of autopep8
francisco-dlp 065b8da
Fix EDS/SEM tilt_stage mapping
francisco-dlp e686efc
Don't include tests in coverage
francisco-dlp a6fe119
Remove empty file
francisco-dlp 3fc8fc5
Update api docs
francisco-dlp 3a1efa3
Fix exclude tests in coverage
francisco-dlp b06aef0
Improve interactive plotting speed
francisco-dlp ac389d7
(Partially) fix nbagg backend sluggishness
francisco-dlp 0466113
Add statsmodels to setup.py
francisco-dlp 26fbce5
Fix exception when updating before drawing
francisco-dlp 2530598
Fix warning when plotting spikesremovaltool
francisco-dlp fead51b
Fix error when fixing spikes at the edges
francisco-dlp 90e96de
Add spikes removal test
francisco-dlp 7786e2a
Automatic style corrections courtesy of autopep8
francisco-dlp a422400
Add ipywidgets spikesremovaltool test
francisco-dlp 345bb59
Automatic style corrections courtesy of autopep8
francisco-dlp 0a2b459
Merge branch 'ipywidgets' of https://github.com/francisco-dlp/hypersp…
francisco-dlp b3915cd
Add ipywidgets roi tests
francisco-dlp 892aad4
Automatic style corrections courtesy of autopep8
francisco-dlp ed3e894
Add ipywidgets preferences test
francisco-dlp a8e1362
ROIs can be used for slicing
francisco-dlp 8594495
Automatic style corrections courtesy of autopep8
francisco-dlp af14d51
Add roi slicing test
francisco-dlp c7a67bb
Automatic style corrections courtesy of autopep8
francisco-dlp ef9b1a0
Rename AxesManager.navigation_sliders -> gui_navigation_slicers
francisco-dlp 32a4bd5
Automatic style corrections courtesy of autopep8
francisco-dlp 999f8dc
Rename adjust_constrast -> gui_adjust_contrast
francisco-dlp 62f453c
Restore the preferences values after test
francisco-dlp 92111bb
Add constrast editor ipywidget test
francisco-dlp 50bd2ec
Deprecate crop
francisco-dlp e783b7b
Remove no-longer-necessary preferences.General.interactive
francisco-dlp 40301fd
link and dlink no longer require traitlets and link takes tranforms arg.
francisco-dlp ad45cc1
Automatic style corrections courtesy of autopep8
francisco-dlp 0e435fe
Fix dlink unlink
francisco-dlp 02a7968
Add tests
francisco-dlp 820dc64
Move link_traits to hyperspy/link_traits
francisco-dlp d556c99
Remove link from api
francisco-dlp 0151461
Fix dlink.unlink and add mixed traits/traitlets tests
francisco-dlp 6824698
Automatic style corrections courtesy of autopep8
francisco-dlp 0b80c79
Merge branch 'RELEASE_next_minor' into ipywidgets
francisco-dlp b8f11a3
Automatic style corrections courtesy of autopep8
francisco-dlp 2c76bba
Add version to link_traits
francisco-dlp 6a02f47
Add __init__
francisco-dlp a2980ef
Rename link_* back to link and dlink
francisco-dlp 8460ccd
Automatic style corrections courtesy of autopep8
francisco-dlp 7f64009
Fix dlink missing d
francisco-dlp 18eb229
Split link_traits into a separate package
francisco-dlp 53e75a2
Split gui_ipywidgets into a separate package
francisco-dlp db8c6a1
Add api that does not import GUIs
francisco-dlp 804a248
Split gui_traitsui into a separate package
francisco-dlp 12baa76
Better import error messages
francisco-dlp 57a189e
Add test for signal_range_from_roi
francisco-dlp 49cf8fd
Automatic style corrections courtesy of autopep8
francisco-dlp 23e6fcf
Remove ipython from install_req, add gui-traitsui and test install op…
francisco-dlp b618fa2
Update anaconda install info
francisco-dlp e7b57a8
Update introduction regarding GUIs
francisco-dlp ac6f78c
Update getting_started and install
francisco-dlp 81a3a00
Update user guide
francisco-dlp 1dce89f
Add doc for using ROIs for indexing
francisco-dlp e0b6573
Add missing >>>
francisco-dlp ac5d49f
Fix error when gui not installed (thanks @thomasaarholt)
francisco-dlp 2982eae
Remove blank line at start of spikes rem help
francisco-dlp ad81ab2
Fix set_signal_range docstring
francisco-dlp c4a1b91
Add informative errors to calibrate
francisco-dlp c25fb2d
(re)Fix nbagg
francisco-dlp 9120a4b
Fix CirCleROI error
francisco-dlp 3a87faf
Improve no toolkit for feature error
francisco-dlp 00b590c
Improve docstring formatting
francisco-dlp 1d78b1f
Merge branch 'RELEASE_next_minor' into ipywidgets
francisco-dlp 2b72eca
Improve error message
francisco-dlp 1b3951c
Un-deprecate crop
francisco-dlp 6a91741
Merge branch 'RELEASE_next_minor' into ipywidgets
francisco-dlp a139398
Automatic style corrections courtesy of autopep8
francisco-dlp 0b05bab
Move enable_*_gui to new prefereces tab
francisco-dlp b16f2ea
Automatic style corrections courtesy of autopep8
francisco-dlp a07d0cd
Change version to 1.3 so that CI runs
francisco-dlp c8a96e7
Don't skip the tests in coverage as it is useful to know if they're a…
francisco-dlp 406d125
Add ROIs gui doc
francisco-dlp 695763f
Update preferences doc
francisco-dlp 6009738
Update api docs
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Is it fixing #1559? If so, does it mean that instead of using
%matplotlib qt, we should recommend using%matplotlib qt4, before importing hyperspy?There was a problem hiding this comment.
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No, it's not fixing #1559. This fixes using that qt5 backend albeit without the traitsui gui as it does not yet support qt5.
The ipywidgets give us a lot more flexibility when choosing the mpl backend as the ipywidgets are obviously backend independent. Therefore this PR should make hspy usable with e.g. tk or nbagg.
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Ok. Forgot my previous comment, it does not make sense...