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Molecular_Dynamics
Molecular_Dynamics PublicThe scripts here describe the process of producing a 100 ns Molecular Dynamics Simulation, the trajectory analysis and the calculations with the MMGBSA and MMPBSA methods. The scripts are writen fo…
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DNA-Strand-Displacment
DNA-Strand-Displacment PublicThe scrits here cover the process of simulations with KinDA and the Visual DSD Tool. Also, there is a script for bleaching correction of the experimental results and for comparison with the in sili…
Python
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Random-System-Sequencing
Random-System-Sequencing PublicThe goal of these scripts is to determine the DNA sequences of a DSD sytem, in order to minimize unintendend interactions between the molecules.
Python
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Genetic-Algorithm-System-Sequencing
Genetic-Algorithm-System-Sequencing PublicThe scripts here are used to mutate one nucleotide in a existing DNA Strand Displacement system, to revaluate the system and to choose to keep the mutated system or discard it.
Python
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Electrochemical-Assay
Electrochemical-Assay PublicThe resources for implementing and using the Gold_Sensor, a device for measuring the concetration of a specific DNA strand.
Python
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