Development release including Fabber and Basil dependencies and prototype GUI
Pre-release
These development packages include the Oxford ASL scripts, the basil, quasil and epi_reg scripts and the fabber_asl executable. It also includes a preview of a simple wxpython based GUI script.
The scripts have been modified so that they when calling a 'helper' program (e.g. asl_file, basil, fabber_asl, they will always take the version from the same directory as the calling script if one exists, if not the version from $FSLDIR/bin, and if not anything it can find in your $PATH.
This should make it easier to work with multiple versions of the scripts and their dependencies without having to install them into $FSLDIR, overwriting existing version. It also makes it easier to produce release with some dependencies bundled, as we have here.
The GUI requires wxpython, matplotlib, numpy and nibabel. These should be readily available for most systems and most Python distributions.
This release adds an option --gdcwarp to specify an additional nonlinear warp image in ASL space, primarily for gradient distortion correction.
Ubuntu 16.04
oxford_asl-3.9.15-ubuntu16.tar.gz
Centos 7
oxford_asl-3.9.15-centos7.tar.gz
Centos 6.5
oxford_asl-3.9.15-centos6.tar.gz