Releases: physimals/oxford_asl
Bugfix update for FSL 6.0.4 (asl_gui fsleyes embedding)
This fixes an issue in 4.0.15 where the embedded fsleyes widget does not work with FSL 6.0.4
Development release including dependencies
These development packages include the Oxford ASL scripts, the basil, quasil and epi_reg scripts and the fabber_asl executable. It also includes a preview of a simple wxpython based GUI script.
The scripts have been modified so that they when calling a 'helper' program (e.g. asl_file, basil, fabber_asl, they will always take the version from the same directory as the calling script if one exists, if not the version from $FSLDIR/bin, and if not anything it can find in your $PATH.
This should make it easier to work with multiple versions of the scripts and their dependencies without having to install them into $FSLDIR, overwriting existing version. It also makes it easier to produce release with some dependencies bundled, as we have here.
The GUI requires wxpython, matplotlib, numpy and nibabel. These should be readily available for most systems and most Python distributions.
This release replaces 4.0.3 and adds an important fix for partial volume correction plus a fix for extrapolation in asl_file which could result in erosion of the edge brain voxels in voxelwise calibration.
Development release including vessel-encoded data plugin and dependencies
These development packages include the Oxford ASL scripts, the basil, quasil and epi_reg scripts and the fabber_asl executable. It also includes a preview of a simple wxpython based GUI script.
The scripts have been modified so that they when calling a 'helper' program (e.g. asl_file, basil, fabber_asl, they will always take the version from the same directory as the calling script if one exists, if not the version from $FSLDIR/bin, and if not anything it can find in your $PATH.
This should make it easier to work with multiple versions of the scripts and their dependencies without having to install them into $FSLDIR, overwriting existing version. It also makes it easier to produce release with some dependencies bundled, as we have here.
The GUI requires wxpython, matplotlib, numpy and nibabel. These should be readily available for most systems and most Python distributions.
This release replaces 4.0.2 and fixes an issue when running the gui under FSLPYTHON
Development release including Fabber and Basil dependencies and prototype GUI
These development packages include the Oxford ASL scripts, the basil, quasil and epi_reg scripts and the fabber_asl executable. It also includes a preview of a simple wxpython based GUI script.
The scripts have been modified so that they when calling a 'helper' program (e.g. asl_file, basil, fabber_asl, they will always take the version from the same directory as the calling script if one exists, if not the version from $FSLDIR/bin, and if not anything it can find in your $PATH.
This should make it easier to work with multiple versions of the scripts and their dependencies without having to install them into $FSLDIR, overwriting existing version. It also makes it easier to produce release with some dependencies bundled, as we have here.
The GUI requires wxpython, matplotlib, numpy and nibabel. These should be readily available for most systems and most Python distributions.
This release replaces 3.9.22 and fixes an issue with the GUI where the echospacing parameter did not
make units clear and did not allow the input of values of the correct magnitude.
Development release including Fabber and Basil dependencies and prototype GUI
These development packages include the Oxford ASL scripts, the basil, quasil and epi_reg scripts and the fabber_asl executable. It also includes a preview of a simple wxpython based GUI script.
The scripts have been modified so that they when calling a 'helper' program (e.g. asl_file, basil, fabber_asl, they will always take the version from the same directory as the calling script if one exists, if not the version from $FSLDIR/bin, and if not anything it can find in your $PATH.
This should make it easier to work with multiple versions of the scripts and their dependencies without having to install them into $FSLDIR, overwriting existing version. It also makes it easier to produce release with some dependencies bundled, as we have here.
The GUI requires wxpython, matplotlib, numpy and nibabel. These should be readily available for most systems and most Python distributions.
This release replaces 3.9.21 and fixes an issue when using TOPUP distortion correction in FSL6.
Development release including Fabber and Basil dependencies and prototype GUI
These development packages include the Oxford ASL scripts, the basil, quasil and epi_reg scripts and the fabber_asl executable. It also includes a preview of a simple wxpython based GUI script.
The scripts have been modified so that they when calling a 'helper' program (e.g. asl_file, basil, fabber_asl, they will always take the version from the same directory as the calling script if one exists, if not the version from $FSLDIR/bin, and if not anything it can find in your $PATH.
This should make it easier to work with multiple versions of the scripts and their dependencies without having to install them into $FSLDIR, overwriting existing version. It also makes it easier to produce release with some dependencies bundled, as we have here.
The GUI requires wxpython, matplotlib, numpy and nibabel. These should be readily available for most systems and most Python distributions.
This release replaces 3.9.20 which fixed two issues, one error affecting data with variable repeats and another which caused the standard space registration to be incorrect when used in conjunction with field maps. 3.9.21 adds a fix for a critical bug which caused oxford_asl to behave incorrectly when used with an existing FSL 6 installation.
Ubuntu 16.04
oxford_asl-3.9.21-ubuntu16.tar.gz
Centos 7
oxford_asl-3.9.21-centos7.tar.gz
Centos 6.5
oxford_asl-3.9.21-centos6.tar.gz
OSX El Capitan 10.11.6
Development release including Fabber and Basil dependencies and prototype GUI
These development packages include the Oxford ASL scripts, the basil, quasil and epi_reg scripts and the fabber_asl executable. It also includes a preview of a simple wxpython based GUI script.
The scripts have been modified so that they when calling a 'helper' program (e.g. asl_file, basil, fabber_asl, they will always take the version from the same directory as the calling script if one exists, if not the version from $FSLDIR/bin, and if not anything it can find in your $PATH.
This should make it easier to work with multiple versions of the scripts and their dependencies without having to install them into $FSLDIR, overwriting existing version. It also makes it easier to produce release with some dependencies bundled, as we have here.
The GUI requires wxpython, matplotlib, numpy and nibabel. These should be readily available for most systems and most Python distributions.
This release fixes two issues, one error affecting data with variable repeats and another which caused the standard space registration to be incorrect when used in conjunction with fieldmaps.
Ubuntu 16.04
oxford_asl-3.9.20-ubuntu16.tar.gz
Centos 7
Centos 6.5
oxford_asl-3.9.20-centos6.tar.gz
OSX El Capitan 10.11.6
Development release including Fabber and Basil dependencies and prototype GUI
These development packages include the Oxford ASL scripts, the basil, quasil and epi_reg scripts and the fabber_asl executable. It also includes a preview of a simple wxpython based GUI script.
The scripts have been modified so that they when calling a 'helper' program (e.g. asl_file, basil, fabber_asl, they will always take the version from the same directory as the calling script if one exists, if not the version from $FSLDIR/bin, and if not anything it can find in your $PATH.
This should make it easier to work with multiple versions of the scripts and their dependencies without having to install them into $FSLDIR, overwriting existing version. It also makes it easier to produce release with some dependencies bundled, as we have here.
The GUI requires wxpython, matplotlib, numpy and nibabel. These should be readily available for most systems and most Python distributions.
This release fixes a regression when using the default CSF calibration method, and a new method of correcting for the Jacobian when using distortion correction to avoid zeroed out slices.
Ubuntu 16.04
oxford_asl-3.9.19-ubuntu16.tar.gz
Centos 7
oxford_asl-3.9.19-centos7.tar.gz
Centos 6.5
oxford_asl-3.9.19-centos6.tar.gz
OSX El Capitan 10.11.6
Development release including Fabber and Basil dependencies and prototype GUI
These development packages include the Oxford ASL scripts, the basil, quasil and epi_reg scripts and the fabber_asl executable. It also includes a preview of a simple wxpython based GUI script.
The scripts have been modified so that they when calling a 'helper' program (e.g. asl_file, basil, fabber_asl, they will always take the version from the same directory as the calling script if one exists, if not the version from $FSLDIR/bin, and if not anything it can find in your $PATH.
This should make it easier to work with multiple versions of the scripts and their dependencies without having to install them into $FSLDIR, overwriting existing version. It also makes it easier to produce release with some dependencies bundled, as we have here.
The GUI requires wxpython, matplotlib, numpy and nibabel. These should be readily available for most systems and most Python distributions.
This release adds fixes to the oxford_asl and asl_calib. In particular calibration using reference regions other than CSF should now work correctly.
Ubuntu 16.04
Centos 7
Centos 6.5
OSX El Capitan 10.11.6
Development release including Fabber and Basil dependencies and prototype GUI
These development packages include the Oxford ASL scripts, the basil, quasil and epi_reg scripts and the fabber_asl executable. It also includes a preview of a simple wxpython based GUI script.
The scripts have been modified so that they when calling a 'helper' program (e.g. asl_file, basil, fabber_asl, they will always take the version from the same directory as the calling script if one exists, if not the version from $FSLDIR/bin, and if not anything it can find in your $PATH.
This should make it easier to work with multiple versions of the scripts and their dependencies without having to install them into $FSLDIR, overwriting existing version. It also makes it easier to produce release with some dependencies bundled, as we have here.
The GUI requires wxpython, matplotlib, numpy and nibabel. These should be readily available for most systems and most Python distributions.
This release adds fixes to the GUI and asl_file
Ubuntu 16.04
oxford_asl-3.9.17-ubuntu16.tar.gz
Centos 7
oxford_asl-3.9.17-centos7.tar.gz
Centos 6.5
oxford_asl-3.9.17-centos6.tar.gz