Ensure compatibility with latest dandelion version

scverse · Jun 30, 2021 · e78701c · e78701c
1 parent a2ee516
commit e78701c
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Showing 2 changed files with 1 addition and 2 deletions.
diff --git a/pyproject.toml b/pyproject.toml
@@ -54,7 +54,7 @@ test = [
     'black'
 ]
 dandelion = [
-    'sc-dandelion',
+    'sc-dandelion>=0.1.3',
     'adjusttext', # see https://github.com/zktuong/dandelion/issues/55
 ]
 doc = [

diff --git a/scirpy/io/_io.py b/scirpy/io/_io.py
@@ -654,7 +654,6 @@ def to_dandelion(adata: AnnData):
                     "sequence_id": f"{tmp_cell.cell_id}_contig_{i}",
                 }
             )
-            chain["umi_count"] = chain.pop("duplicate_count")
             contig_dicts[chain["sequence_id"]] = chain
 
     data = pd.DataFrame.from_dict(contig_dicts, orient="index")