This repository maintains the Nextflow workflow code for Mutect2 somatic variant calling. The underlying variant calling and related tools are originated from GATK https://github.com/broadinstitute/gatk.
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ICGC ARGO GATK Mutect2 Somatic Variant Calling Workflow
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icgc-argo-workflows/gatk-mutect2-variant-calling
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ICGC ARGO GATK Mutect2 Somatic Variant Calling Workflow
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License
AGPL-3.0 and 2 other licenses found
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AGPL-3.0
LICENSE
AGPL-3.0
LICENSE.txt
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LICENSE-short