add support for docker #49
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lindaxiang
requested changes
Dec 19, 2022
process/score_upload.nf
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| containerOptions "--bind \$(pwd):/score-client/logs" | ||
| containerOptions "--bind \$(pwd):/song-client/logs" | ||
| } else if (workflow.containerEngine == "docker") { | ||
| containerOptions "-v \$(pwd):/song-client/logs" |
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Should it be score-client/logs?
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Fixed in
nextflow-data-processing-utility-tools/process/score_upload.nf
Lines 37 to 40 in 1a01b2e
lindaxiang
reviewed
Jan 4, 2023
| @@ -36,6 +36,8 @@ process scoreUpload { | |||
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| if (workflow.containerEngine == "singularity") { | |||
| containerOptions "--bind \$(pwd):/score-client/logs" | |||
| } else if (workflow.containerEngine == "docker") { | |||
| containerOptions "-v \$(pwd):/score-client/logs" | |||
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A very minor suggestion, can we change to
-v \$(pwd)/logs:/score-client/logs
lindaxiang
approved these changes
Jan 4, 2023
|
closing. new branch in #51 |
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