checking local validation

icgc-dcc · May 24, 2017 · 4e14fff · 4e14fff
1 parent b6ed13a
commit 4e14fff
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Showing 2 changed files with 2 additions and 4 deletions.
diff --git a/tests/data/workspace/variation.20170119/local_val/analysis.yaml b/tests/data/workspace/variation.20170119/local_val/analysis.yaml
@@ -5,10 +5,7 @@ analysis:
   #analysisDate: "2017-02-09"
   analysisTypeId: 80  # Sequence variation (VCF)
   genomeId: 453  # GRCh38
-  chromosomeReferences:
-    - 24
-    - 25
-    - 26
+  chromosomeReferences: [g]
   experimentTypeId: [700]  # whole genome sequencing
   platform: Illumina HiSeq 2000
 sample:

diff --git a/tests/submission/test_submitter.py b/tests/submission/test_submitter.py
@@ -23,6 +23,7 @@ def test_submitter(ctx, mock_server):
 
     ctx.obj['SUBMISSION']['sessionToken'] = 'X-Token'
     ctx.obj['SETTINGS']['icgc_project_code'] = "abjdh"
+    #ctx.obj['SETTINGS']['ega_study_id'] = "abjdh"
     ctx.obj['SUBMISSION']['id'] = "55"
 
     #fix the put fixture