checking submitter coverage

tests/conftest.py

@@ -96,9 +96,14 @@ def mock_server(ctx):
 
     #for test_submitter/object_submission
     httpretty.register_uri(httpretty.GET, "%ssamples/ssample_y?idType=ALIAS&skip=0&limit=0" % (ctx.obj['SETTINGS']['apiUrl']),
-                            body='{"header" : {"code" : "200"}, "response" : {"result" : [{ "id":"12345", "status": ["SUBMITTED_DRAFT"]}]}}',
+                            body='{"header" : {"code" : "200"}, "response" : {"result" : [{ "id":"12345", "status": ["SUBMITTED"]}]}}',
                     content_type="application/json")
     #for object_submission/update_obj
     httpretty.register_uri(httpretty.GET, "%ssamples/12345?action=EDIT" % (ctx.obj['SETTINGS']['apiUrl']),
                             body='{"header" : {"code" : "200"}, "response" : {"result" : [{ "id":"12345", "status": ["SUBMITTED_DRAFT"]]}]}}',
+                    content_type="application/json")
+
+    #for submitter
+    httpretty.register_uri(httpretty.PUT, "URL",
+                           Body='"username="", password="", hostname="example.com", port="80", path="/samples/12345"',
                     content_type="application/json")

tests/submission/test_init.py

@@ -1,4 +1,5 @@
 from click.testing import CliRunner
+import click
 from egasub.submission.init import init_workspace, truncate_string, make_dummy_dac, make_dummy_policy, initialize_dac_policy_study
 from egasub.ega.entities import Dac, Policy, EgaEnums
 import pytest
@@ -33,12 +34,15 @@ def test_make_dummy_dac():
 def test_make_dummy_policy():
     assert isinstance(make_dummy_policy(make_dummy_dac()), Policy)
 
+#@click.command()
+#@click.option('1', prompt = True)
 def test_init_workspace(ctx, mock_server):
     ctx.obj['SETTINGS']['ega_submitter_account'] = 'test_account'
     ctx.obj['SETTINGS']['ega_submitter_password'] = 'test_password'
     ctx.obj['EGA_ENUMS'] = EgaEnums()
     ctx.obj['SETTINGS']['ega_policy_id'] = 'test_id'
 
+
     with pytest.raises(IOError):
         init_workspace(ctx, 'test_ac', 'test_pass', 'test_token', 'test_code')
 

tests/submission/test_submitter.py

@@ -15,10 +15,10 @@ def test_submitter(ctx, mock_server):
 
     ctx.obj['SUBMISSION']['sessionToken'] = 'X-Token'
     ctx.obj['SETTINGS']['icgc_project_code'] = "abjdh"
-
-
-    with pytest.raises(ValueError):
-        submitter.submit(unaligned, True)
+    ctx.obj['SUBMISSION']['id'] = "55"
+    #this one
+    #with pytest.raises(ValueError):
+    submitter.submit(unaligned, True)
 
     attributes = [Attribute('tag1', 'value1'), Attribute('tag2', 'value2')]
     sample = Sample('an alias','the title','the description',123,2,'head','test line','test region','a phenotype',33,'anonymized name',22,10,'some details',attributes,33)