more coverage in submitter

icgc-dcc · May 18, 2017 · a5035d3 · a5035d3
1 parent df9056f
commit a5035d3
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Showing 2 changed files with 8 additions and 1 deletion.
diff --git a/tests/submission/test_submitter.py b/tests/submission/test_submitter.py
@@ -11,6 +11,9 @@ def test_submitter(ctx, mock_server):
     unaligned = Unaligned('ssample_y')
     alignment = Alignment('test_a')
     os.chdir(initial_directory)
+    os.chdir('tests/data/workspace/unaligned.20170110/')
+    unaligned2 = Unaligned('ssample_y')
+    os.chdir(initial_directory)
 
     submitter = Submitter(ctx)
 
@@ -21,6 +24,8 @@ def test_submitter(ctx, mock_server):
     ctx.obj['SETTINGS']['icgc_project_code'] = "abjdh"
     ctx.obj['SUBMISSION']['id'] = "55"
 
+    submitter.submit(unaligned2,True)
+
     submitter.submit(unaligned, True)
 
     ctx.obj['CURRENT_DIR_TYPE'] = 'alignment'

diff --git a/tests/test_utils.py b/tests/test_utils.py
@@ -1,5 +1,6 @@
 
 from egasub.utils import initialize_app, initialize_log, get_current_dir_type, get_settings, find_workspace_root
+
 import pytest
 import os
 
@@ -10,7 +11,8 @@ def test_initialize_app(ctx, mock_server):
     ctx.obj['WORKSPACE_PATH'] = "tests/data/workspace/"
     #ctx.obj['CURRENT_DIR'] = 'tests/data/workspace/'
     #ctx.obj['WORKSPACE_PATH']['SETTINGS'] =
-    #with pytest.raises(AttributeError):
+
+    #with pytest.raises(Exception):
     #    initialize_app(ctx)
 
     #ctx.obj['CURRENT_DIR'] = None