/
PorousFlowConnectedNodes.C
204 lines (184 loc) · 7.92 KB
/
PorousFlowConnectedNodes.C
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
//* This file is part of the MOOSE framework
//* https://www.mooseframework.org
//*
//* All rights reserved, see COPYRIGHT for full restrictions
//* https://github.com/idaholab/moose/blob/master/COPYRIGHT
//*
//* Licensed under LGPL 2.1, please see LICENSE for details
//* https://www.gnu.org/licenses/lgpl-2.1.html
#include "PorousFlowConnectedNodes.h"
#include "Conversion.h" // for stringify
#include "MooseError.h"
PorousFlowConnectedNodes::PorousFlowConnectedNodes() { clear(); }
void
PorousFlowConnectedNodes::clear()
{
_still_adding_global_nodes = true;
_min_global_id = std::numeric_limits<dof_id_type>::max();
_max_global_id = std::numeric_limits<dof_id_type>::lowest();
_set_of_global_ids.clear();
_global_id.clear();
_sequential_id.clear();
_still_adding_connections = true;
_neighbor_sets.clear();
_sequential_neighbors.clear();
}
std::size_t
PorousFlowConnectedNodes::numNodes() const
{
if (_still_adding_global_nodes)
return _set_of_global_ids.size();
return _global_id.size();
}
void
PorousFlowConnectedNodes::addGlobalNode(dof_id_type global_node_ID)
{
if (!_still_adding_global_nodes)
mooseError("PorousFlowConnectedNodes: addGlobalNode called, but _still_adding_global_nodes is "
"false. You possibly called finalizeAddingGlobalNodes too soon.");
_set_of_global_ids.insert(global_node_ID);
_min_global_id = std::min(_min_global_id, global_node_ID);
_max_global_id = std::max(_max_global_id, global_node_ID);
}
void
PorousFlowConnectedNodes::finalizeAddingGlobalNodes()
{
// populate the _global_id vector with the values in the set of global IDs
_global_id.clear();
for (const auto & n : _set_of_global_ids)
_global_id.push_back(n);
_still_adding_global_nodes = false;
_set_of_global_ids.clear();
// populate the _sequential_id
_sequential_id.assign(_max_global_id - _min_global_id + 1, 0);
for (std::size_t i = 0; i < _global_id.size(); ++i)
_sequential_id[_global_id[i] - _min_global_id] = i;
// prepare the _neighbor_sets
_neighbor_sets.assign(_global_id.size(), std::set<dof_id_type>());
}
std::size_t
PorousFlowConnectedNodes::sizeSequential() const
{
if (_still_adding_global_nodes)
mooseError("PorousFlowConnectedNodes: sizeSequential called, but _still_adding_global_nodes is "
"true. Probably you should have called finalizeAddingGlobalNodes.");
return _sequential_id.size();
}
dof_id_type
PorousFlowConnectedNodes::globalID(dof_id_type sequential_node_ID) const
{
if (_still_adding_global_nodes)
mooseError("PorousFlowConnectedNodes: globalID called, but _still_adding_global_nodes is true. "
" Probably you should have called finalizeAddingGlobalNodes.");
return _global_id[sequential_node_ID];
}
dof_id_type
PorousFlowConnectedNodes::sequentialID(dof_id_type global_node_ID) const
{
if (_still_adding_global_nodes)
mooseError("PorousFlowConnectedNodes: sequentialID called, but _still_adding_global_nodes is "
"true. Probably you should have called finalizeAddingGlobalNodes.");
return _sequential_id[global_node_ID - _min_global_id];
}
void
PorousFlowConnectedNodes::addConnection(dof_id_type global_node_from, dof_id_type global_node_to)
{
if (_still_adding_global_nodes)
mooseError("PorousFlowConnectedNodes: addConnection called, but _still_adding_global_nodes is "
"true. Probably you should have called finalizeAddingGlobalNodes.");
if (!_still_adding_connections)
mooseError("PorousFlowConnectedNodes: addConnection called, but _still_adding_connections is "
"false. Probably you should have called finalizeAddingConnections.");
_neighbor_sets[sequentialID(global_node_from)].insert(global_node_to);
}
void
PorousFlowConnectedNodes::finalizeAddingConnections()
{
_sequential_neighbors.assign(_global_id.size(), std::vector<dof_id_type>());
_global_neighbors.assign(_global_id.size(), std::vector<dof_id_type>());
for (std::size_t i = 0; i < _global_id.size(); ++i)
for (const auto & n : _neighbor_sets[i])
{
_sequential_neighbors[i].push_back(sequentialID(n));
_global_neighbors[i].push_back(n);
}
_still_adding_connections = false;
_neighbor_sets.clear();
}
const std::vector<dof_id_type> &
PorousFlowConnectedNodes::sequentialConnectionsToGlobalID(dof_id_type global_node_ID) const
{
if (_still_adding_connections)
mooseError("PorousFlowConnectedNodes: sequentialConnectionsToGlobalID called, but "
"_still_adding_connections is true. Probably you should have called "
"finalizeAddingConnections.");
return _sequential_neighbors[sequentialID(global_node_ID)];
}
const std::vector<dof_id_type> &
PorousFlowConnectedNodes::sequentialConnectionsToSequentialID(dof_id_type sequential_node_ID) const
{
if (_still_adding_connections)
mooseError("PorousFlowConnectedNodes: sequentialConnectionsToSequentialID called, but "
"_still_adding_connections is true. Probably you should have called "
"finalizeAddingConnections.");
return _sequential_neighbors[sequential_node_ID];
}
const std::vector<dof_id_type> &
PorousFlowConnectedNodes::globalConnectionsToGlobalID(dof_id_type global_node_ID) const
{
if (_still_adding_connections)
mooseError("PorousFlowConnectedNodes: globalConnectionsToGlobalID called, but "
"_still_adding_connections is true. Probably you should have called "
"finalizeAddingConnections.");
return _global_neighbors[sequentialID(global_node_ID)];
}
const std::vector<dof_id_type> &
PorousFlowConnectedNodes::globalConnectionsToSequentialID(dof_id_type sequential_node_ID) const
{
if (_still_adding_connections)
mooseError("PorousFlowConnectedNodes: globalConnectionsToSequentialID called, but "
"_still_adding_connections is true. Probably you should have called "
"finalizeAddingConnections.");
return _global_neighbors[sequential_node_ID];
}
const std::vector<dof_id_type> &
PorousFlowConnectedNodes::globalIDs() const
{
if (_still_adding_global_nodes)
mooseError("PorousFlowConnectedNodes: globalIDs called, but _still_adding_global_nodes is "
"true. Probably you should have called finalizeAddingGlobalNodes.");
return _global_id;
}
unsigned
PorousFlowConnectedNodes::indexOfGlobalConnection(dof_id_type global_node_ID_from,
dof_id_type global_node_ID_to) const
{
if (_still_adding_connections)
mooseError(
"PorousFlowConnectedNodes: indexOfGlobalConnection called, but _still_adding_connections "
"is true. Probably you should have called finalizeAddingConnections.");
const std::vector<dof_id_type> con = _global_neighbors[sequentialID(global_node_ID_from)];
const auto it = std::find(con.begin(), con.end(), global_node_ID_to);
if (it == con.end())
mooseError("PorousFlowConnectedNode: global_node_ID_from " +
Moose::stringify(global_node_ID_from) + " has no connection to global_node_ID_to " +
Moose::stringify(global_node_ID_to));
return std::distance(con.begin(), it);
}
unsigned
PorousFlowConnectedNodes::indexOfSequentialConnection(dof_id_type sequential_node_ID_from,
dof_id_type sequential_node_ID_to) const
{
if (_still_adding_connections)
mooseError("PorousFlowConnectedNodes: indexOfSequentialConnection called, but "
"_still_adding_connections is true. Probably you should have called "
"finalizeAddingConnections.");
const std::vector<dof_id_type> con = _sequential_neighbors[sequential_node_ID_from];
const auto it = std::find(con.begin(), con.end(), sequential_node_ID_to);
if (it == con.end())
mooseError("PorousFlowConnectedNode: sequential_node_ID_from " +
Moose::stringify(sequential_node_ID_from) +
" has no connection to sequential_node_ID_to " +
Moose::stringify(sequential_node_ID_to));
return std::distance(con.begin(), it);
}