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Cell Maps Generate Hierarchy

https://app.travis-ci.com/idekerlab/cellmaps_generate_hierarchy.svg?branch=main

The Cell Maps Generate Hierarchy Tool generates hierarchy from Cell Maps Coembedding using HiDeF. It accepts one or more coembedding directories corresponding to multiple folds of the same data.

The tool creates an output directory where results are stored and registered within Research Object Crates (RO-Crate) using the FAIRSCAPE-cli.

Overview of Cell Maps Generate Hierarchy

Overview of Cell Maps Generate Hierarchy which calculating cosine similarities for embeddings followed by protein to protein interaction networks creation, HiDeF invocation to generate hierarchy, and finally hierarchy "maturation"

.. toctree::
   :maxdepth: 2
   :caption: Contents:

   installation
   usage
   inputs
   outputs
   modules
   developer
   authors
   history

Indices and tables