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kid_a_setup.diff
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diff -ruN '--exclude=mphys_libcloud_lgr.f90' '--exclude=kida_SC_2D_libcloud_lgr.nml' '--exclude=*~' '--exclude=*.mod' '--exclude=*.o' '--exclude=bin' '--exclude=4A_code' '--exclude=UM_source' '--exclude=.includes' '--exclude=case.used' '--exclude=output' '--exclude=gmon.out' kid_a_setup.orig/namelists/SC_2D_input.nml kid_a_setup/namelists/SC_2D_input.nml
--- kid_a_setup.orig/namelists/SC_2D_input.nml 2015-06-02 09:23:07.000000000 +0200
+++ kid_a_setup/namelists/SC_2D_input.nml 2015-08-18 12:19:50.307569068 +0200
@@ -3,6 +3,6 @@
! comment out this call (in namelists.nml) and use this file to input
! the value.
&namelistToUse
-fileIn='namelists/SC_2D.nml'
+fileIn='namelists/kida_SC_2D_libcloud_lgr.nml'
fileOut='output/SC_2D_out.nc'
/
diff -ruN '--exclude=mphys_libcloud_lgr.f90' '--exclude=kida_SC_2D_libcloud_lgr.nml' '--exclude=*~' '--exclude=*.mod' '--exclude=*.o' '--exclude=bin' '--exclude=4A_code' '--exclude=UM_source' '--exclude=.includes' '--exclude=case.used' '--exclude=output' '--exclude=gmon.out' kid_a_setup.orig/namelists/WMO_CASE1_input.nml kid_a_setup/namelists/WMO_CASE1_input.nml
--- kid_a_setup.orig/namelists/WMO_CASE1_input.nml 2015-06-02 09:23:07.000000000 +0200
+++ kid_a_setup/namelists/WMO_CASE1_input.nml 2015-08-18 13:06:38.503423920 +0200
@@ -3,6 +3,6 @@
! comment out this call (in namelists.nml) and use this file to input
! the value.
&namelistToUse
-fileIn='namelists/WMO_CASE1.nml'
+fileIn='namelists/kida_SC_2D_libcloud_lgr.nml'
fileOut='output/WMO_CASE1_out.nc'
/
diff -ruN '--exclude=mphys_libcloud_lgr.f90' '--exclude=kida_SC_2D_libcloud_lgr.nml' '--exclude=*~' '--exclude=*.mod' '--exclude=*.o' '--exclude=bin' '--exclude=4A_code' '--exclude=UM_source' '--exclude=.includes' '--exclude=case.used' '--exclude=output' '--exclude=gmon.out' kid_a_setup.orig/src/compiler_options.inc kid_a_setup/src/compiler_options.inc
--- kid_a_setup.orig/src/compiler_options.inc 2015-06-02 09:23:07.000000000 +0200
+++ kid_a_setup/src/compiler_options.inc 2015-08-18 12:19:50.307569068 +0200
@@ -53,10 +53,11 @@
LD=$(F90) # Linker
INCDF=-I$(NCPATH)/include
-LNCDF=-L$(NCPATH)/lib -lnetcdf
+LNCDF=-L$(NCPATH)/lib -lnetcdff
LDFLAGS=$(INCDF) $(LNCDF)
EXECUTABLE=$(MODEL)_$(CASE).exe
+SHARED_LIB=$(MODEL)_$(CASE).so
F2PY=/usr/local/cdat/bin/f2py
F2PY_OPTS=--fcompiler-exec=$(COMPILER) $(LDFLAGS)
diff -ruN '--exclude=mphys_libcloud_lgr.f90' '--exclude=kida_SC_2D_libcloud_lgr.nml' '--exclude=*~' '--exclude=*.mod' '--exclude=*.o' '--exclude=bin' '--exclude=4A_code' '--exclude=UM_source' '--exclude=.includes' '--exclude=case.used' '--exclude=output' '--exclude=gmon.out' kid_a_setup.orig/src/diagnostics.f90 kid_a_setup/src/diagnostics.f90
--- kid_a_setup.orig/src/diagnostics.f90 2015-06-02 09:23:07.000000000 +0200
+++ kid_a_setup/src/diagnostics.f90 2015-08-18 15:19:25.619012121 +0200
@@ -21,6 +21,8 @@
Use namelists, only: KiD_outdir, KiD_outfile, fileNameOut
+ use iso_c_binding, only: c_int, c_float, c_char
+
Implicit none
type, public :: dgID
@@ -845,6 +847,9 @@
write (unit=6,fmt='(T3, i3, a)') int(100*i_dgtime&
&/float(maxn_dgtimes)), '% completed...'
+!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
+call write_diagnostics !!!!
+!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
end subroutine save_diagnostics_2d
subroutine allocate_dgs_1DTS(dgStore)
@@ -858,13 +863,13 @@
if (nx == 1) then
maxn_dgtimes=max(maxn_dgtimes, int(n_dgtimes*dt/dg_dt)+1)
- allocate(dgStore%data(nz, maxn_dgtimes))
+ allocate(dgStore%data(nz, 2)) !!!!
dgStore%data=unset_real
else
maxn_dgtimes=max(maxn_dgtimes, int(n_dgtimes*dt/dg_dt)+1)
- allocate(dgStore%data(1:nx, maxn_dgtimes))
+ allocate(dgStore%data(1:nx, 2)) !!!!
dgStore%data=unset_real
endif
@@ -880,7 +885,7 @@
n_dgtimes = n_times - n_offset
maxn_dgtimes=max(maxn_dgtimes, int(n_dgtimes*dt/dg_dt)+1)
- allocate(dgStore%data(nz, 1:nx, maxn_dgtimes))
+ allocate(dgStore%data(nz, 1:nx, 2)) !!!!
dgStore%data=unset_real
end subroutine allocate_dgs_2DTS
@@ -894,7 +899,7 @@
n_dgtimes = n_times - n_offset
maxn_dgtimes=max(maxn_dgtimes, int(n_dgtimes*dt/dg_dt)+1)
- allocate(dgStore%data(nz, max_nbins, maxn_dgtimes))
+ allocate(dgStore%data(nz, max_nbins, 2)) !!!!
dgStore%data=unset_real
end subroutine allocate_dgs_bindgs
@@ -908,7 +913,7 @@
n_dgtimes = n_times - n_offset
maxn_dgtimes=max(maxn_dgtimes, int(n_dgtimes*dt/dg_dt)+1)
- allocate(dgStore%data(nz, nx, max_nbins, maxn_dgtimes))
+ allocate(dgStore%data(nz, nx, max_nbins, 2)) !!!!
dgStore%data=unset_real
end subroutine allocate_dgs_bindgs_2d
@@ -922,7 +927,7 @@
n_dgtimes = n_times - n_offset
maxn_dgtimes=max(maxn_dgtimes, int(n_dgtimes*dt/dg_dt)+1)
- allocate(dgStore%data(maxn_dgtimes))
+ allocate(dgStore%data(2)) !!!!
dgStore%data=unset_real
end subroutine allocate_dgs_ScalarTS
@@ -972,7 +977,7 @@
real(sp), intent(in) :: field(:)
character(*), intent(in) :: name
- integer, intent(in) :: itime
+ integer, value :: itime !!!!
character(*), intent(in), optional :: units, dim, longname
!local variables for column diagnostics
@@ -1019,6 +1024,9 @@
dg(ivar)%longname=trim(clongname)
end if
+!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
+if (itime .gt. 1) itime = 2 !!!!
+!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
dg(ivar)%data(:,itime)=field(:)
end subroutine save_dg_1d_sp
@@ -1029,7 +1037,7 @@
integer, intent(in) :: ks, ke ! start and end of range
real(sp), intent(in) :: field(:)
character(*), intent(in) :: name
- integer, intent(in) :: itime
+ integer, value :: itime !!!!
character(*), intent(in), optional :: units, dim, longname
!local variables
@@ -1074,6 +1082,9 @@
dg(ivar)%dim=trim(cdim)
dg(ivar)%longname=trim(clongname)
end if
+!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
+if (itime .gt. 1) itime = 2 !!!!
+!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
dg(ivar)%data(ks:ke,itime)=field(ks:ke)
end subroutine save_dg_1d_range_sp
@@ -1084,7 +1095,7 @@
integer, intent(in) :: k ! index of value to input
real(sp), intent(in) :: value
character(*), intent(in) :: name
- integer, intent(in) :: itime
+ integer, value :: itime !!!!
character(*), intent(in), optional :: units, dim, longname
!local variables
@@ -1128,16 +1139,34 @@
dg(ivar)%dim=trim(cdim)
dg(ivar)%longname=trim(clongname)
end if
+!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
+if (itime .gt. 1) itime = 2 !!!!
+!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
dg(ivar)%data(k,itime)=value
end subroutine save_dg_1d_point_sp
+
+ subroutine save_dg_2d_sp_c( &
+ field, nx, nz, &
+ name, namelen, &
+ units, unitslen, &
+ itime &
+ )
+ integer(c_int), intent(in), value :: nx, nz, itime, namelen, unitslen
+ real(c_float), intent(in) :: field(nz, nx)
+ character(namelen) :: name
+ character(unitslen) :: units
+
+ call save_dg_2d_sp(field, name, itime, units, "z,x")
+ end subroutine
+
subroutine save_dg_2d_sp(field, name, itime, units, &
dim, longname)
real(sp), intent(in) :: field(:,:)
character(*), intent(in) :: name
- integer, intent(in) :: itime
+ integer, value :: itime !!!!
character(*), intent(in), optional :: units, dim, longname
!local variables
@@ -1182,6 +1211,9 @@
dg(ivar)%longname=trim(clongname)
end if
+!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
+if (itime .gt. 1) itime = 2 !!!!
+!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
dg(ivar)%data(:,:,itime)=field(:,:)
end subroutine save_dg_2d_sp
@@ -1192,7 +1224,7 @@
integer, intent(in) :: k ,l! indices of value to input
real(sp), intent(in) :: value
character(*), intent(in) :: name
- integer, intent(in) :: itime
+ integer, value :: itime !!!!
character(*), intent(in), optional :: units, dim, longname
!local variables
@@ -1236,6 +1268,9 @@
dg(ivar)%dim=trim(cdim)
dg(ivar)%longname=trim(clongname)
end if
+!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
+if (itime .gt. 1) itime = 2 !!!!
+!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
dg(ivar)%data(k,l,itime)=value
end subroutine save_dg_2d_point_sp
@@ -1244,7 +1279,7 @@
real(sp), intent(in) :: value
character(*), intent(in) :: name
- integer, intent(in) :: itime
+ integer, value :: itime !!!!
character(*), intent(in), optional :: units, dim, longname
!local variables
@@ -1285,6 +1320,9 @@
dg(ivar)%dim=trim(cdim)
dg(ivar)%longname=trim(clongname)
end if
+!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
+if (itime .gt. 1) itime = 2 !!!!
+!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
dg(ivar)%data(itime)=value
end subroutine save_dg_scalar_sp
@@ -1293,7 +1331,7 @@
real(dp), intent(in) :: field(:)
character(*), intent(in) :: name
- integer, intent(in) :: itime
+ integer, value :: itime !!!!
character(*), intent(in), optional :: units, dim, longname
!local variables
@@ -1338,6 +1376,9 @@
dg(ivar)%dim=trim(cdim)
dg(ivar)%longname=trim(clongname)
end if
+!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
+if (itime .gt. 1) itime = 2 !!!!
+!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
dg(ivar)%data(:,itime)=field(:)
end subroutine save_dg_1d_dp
@@ -1348,7 +1389,7 @@
integer, intent(in) :: ks, ke ! start and end of range
real(dp), intent(in) :: field(:)
character(*), intent(in) :: name
- integer, intent(in) :: itime
+ integer, value :: itime !!!!
character(*), intent(in), optional :: units, dim, longname
!local variables
@@ -1393,6 +1434,9 @@
dg(ivar)%dim=trim(cdim)
dg(ivar)%longname=trim(clongname)
end if
+!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
+if (itime .gt. 1) itime = 2 !!!!
+!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
dg(ivar)%data(ks:ke,itime)=field(ks:ke)
end subroutine save_dg_1d_range_dp
@@ -1403,7 +1447,7 @@
integer, intent(in) :: k ! index of value to input
real(dp), intent(in) :: value
character(*), intent(in) :: name
- integer, intent(in) :: itime
+ integer, value :: itime !!!!
character(*), intent(in), optional :: units, dim, longname
!local variables
@@ -1447,6 +1491,9 @@
dg(ivar)%dim=trim(cdim)
dg(ivar)%longname=trim(clongname)
end if
+!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
+if (itime .gt. 1) itime = 2 !!!!
+!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
dg(ivar)%data(k,itime)=value
end subroutine save_dg_1d_point_dp
@@ -1456,7 +1503,7 @@
real(dp), intent(in) :: field(:,:)
character(*), intent(in) :: name
- integer, intent(in) :: itime
+ integer, value :: itime !!!!
character(*), intent(in), optional :: units, dim, longname
!local variables
@@ -1500,6 +1547,9 @@
dg(ivar)%dim=trim(cdim)
dg(ivar)%longname=trim(clongname)
end if
+!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
+if (itime .gt. 1) itime = 2 !!!!
+!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
dg(ivar)%data(:,:,itime)=field(:,:)
end subroutine save_dg_2d_dp
@@ -1510,7 +1560,7 @@
integer, intent(in) :: k ,l! indices of value to input
real(dp), intent(in) :: value
character(*), intent(in) :: name
- integer, intent(in) :: itime
+ integer, value :: itime !!!!
character(*), intent(in), optional :: units, dim, longname
!local variables
@@ -1554,6 +1604,9 @@
dg(ivar)%dim=trim(cdim)
dg(ivar)%longname=trim(clongname)
end if
+!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
+if (itime .gt. 1) itime = 2 !!!!
+!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
dg(ivar)%data(k,l,itime)=value
end subroutine save_dg_2d_point_dp
@@ -1563,7 +1616,7 @@
real(dp), intent(in) :: value
character(*), intent(in) :: name
- integer, intent(in) :: itime
+ integer, value :: itime !!!!
character(*), intent(in), optional :: units, dim, longname
!local variables
@@ -1604,6 +1657,9 @@
dg(ivar)%dim=trim(cdim)
dg(ivar)%longname=trim(clongname)
end if
+!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
+if (itime .gt. 1) itime = 2 !!!!
+!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
dg(ivar)%data(itime)=value
end subroutine save_dg_scalar_dp
@@ -1614,7 +1670,7 @@
real(sp), intent(in) :: field(:,:)
character(*), intent(in) :: name
!character(*), intent(in) :: bin
- integer, intent(in) :: itime
+ integer, value :: itime !!!!
character(*), intent(in), optional :: units, dim, longname
!local variables
@@ -1659,6 +1715,9 @@
dg(ivar)%longname=trim(clongname)
end if
+!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
+if (itime .gt. 1) itime = 2 !!!!
+!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
dg(ivar)%data(:,:,itime)=field(:,:)
end subroutine save_dg_bin_sp
@@ -1669,7 +1728,7 @@
real(dp), intent(in) :: field(:,:)
character(*), intent(in) :: name
!character(*), intent(in) :: bin
- integer, intent(in) :: itime
+ integer, value :: itime !!!!
character(*), intent(in), optional :: units, dim, longname
!local variables
@@ -1714,16 +1773,33 @@
dg(ivar)%longname=trim(clongname)
end if
+!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
+if (itime .gt. 1) itime = 2 !!!!
+!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
dg(ivar)%data(:,:,itime)=field(:,:)
end subroutine save_dg_bin_dp
+ subroutine save_dg_2d_bin_sp_c( &
+ field, nb, nx, nz, &
+ name, namelen, &
+ units, unitslen, &
+ itime &
+ )
+ integer(c_int), intent(in), value :: nb, nx, nz, itime, namelen, unitslen
+ real(c_float), intent(in) :: field(nz, nx, nb)
+ character(namelen) :: name
+ character(unitslen) :: units
+
+ call save_dg_2d_bin_sp(field, name, itime, units, "z,x,b")
+ end subroutine
+
subroutine save_dg_2d_bin_sp(field, name, itime, units, &
dim, longname)
real(sp), intent(in) :: field(:,:,:)
character(*), intent(in) :: name
- integer, intent(in) :: itime
+ integer, value :: itime !!!!
character(*), intent(in), optional :: units, dim, longname
!local variables
@@ -1768,6 +1844,9 @@
dg(ivar)%longname=trim(clongname)
end if
+!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
+if (itime .gt. 1) itime = 2 !!!!
+!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
dg(ivar)%data(:,:,:,itime)=field(:,:,:)
end subroutine save_dg_2d_bin_sp
@@ -1777,7 +1856,7 @@
real(dp), intent(in) :: field(:,:,:)
character(*), intent(in) :: name
- integer, intent(in) :: itime
+ integer, value :: itime !!!!
character(*), intent(in), optional :: units, dim, longname
!local variables
@@ -1822,10 +1901,26 @@
dg(ivar)%longname=trim(clongname)
end if
+!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
+if (itime .gt. 1) itime = 2 !!!!
+!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
dg(ivar)%data(:,:,:,itime)=field(:,:,:)
end subroutine save_dg_2d_bin_dp
+ subroutine save_binData_sp_c(&
+ field, nb, &
+ name, namelen, &
+ units, unitslen &
+ )
+ integer(c_int), intent(in), value :: nb, namelen, unitslen
+ real(c_float), intent(in) :: field(nb)
+ character(namelen) :: name
+ character(unitslen) :: units
+
+ call save_binData_sp(field, name, units)
+ end subroutine
+
subroutine save_binData_sp(field, name, units, &
longname)
! Save the bin data (e.g. sizes or masses)
@@ -1912,7 +2007,7 @@
end subroutine save_binData_dp
- subroutine write_diagnostics
+ recursive subroutine write_diagnostics !!!!
Use netcdf
Use switches, only : icase
@@ -1924,15 +2019,34 @@
integer :: ivar, itmp=1, offset=3, n_dgs, k, iq, tim, ibin
character(4) :: char4
+!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
+integer, save :: ncid !!!!
+integer :: vid, itime !!!!
+logical, save :: init = .false. !!!!
+!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
+
! netcdf variables
- integer :: status, ncid, zid, xid, timeid, binsid
+ integer :: status, zid, xid, timeid, binsid !!!!
integer :: tzdim(2), txdim(2), tzldim(3), tzxdim(3), tzxbindim(4) &
,dim, dim2d(2), dim3d(3), dim4d(4)
integer, allocatable :: varid(:)
- real, allocatable :: field3d(:,:,:)
- real, allocatable :: field4d(:,:,:,:)
-
- write(6,*) 'Integration complete.'
+ real, allocatable :: field3d(:,:) !!!!
+ real, allocatable :: field4d(:,:,:) !!!!
+
+!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
+if (i_dgtime .eq. 1) return !!!!
+ !!!!
+if ((i_dgtime .eq. 2) .and. (init .eqv. .false.)) then !!!!
+ init = .true. !!!!
+ call write_diagnostics !!!!
+endif !!!!
+ !!!!
+itime = 2 !!!!
+ !!!!
+if (init) then !!!!
+ itime = 1 !!!!
+ i_dgtime = 1 !!!!
+!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
if (fileNameOut=='')then
write(char4,'(I4.4)')icase
@@ -1990,7 +2104,7 @@
status=nf90_put_att(ncid, nf90_global, 'references', references)
status=nf90_put_att(ncid, nf90_global, 'comments', comments)
- status=nf90_def_dim(ncid, 'time', int(n_dgtimes, kind=incdfp), timeid)
+ status=nf90_def_dim(ncid, 'time', NF90_UNLIMITED, timeid) !!!!
call check_ncstatus(status)
status=nf90_def_dim(ncid, 'z', int(nz, kind=incdfp), zid)
call check_ncstatus(status)
@@ -1999,11 +2113,11 @@
status=nf90_def_dim(ncid, 'x', int(nx, kind=incdfp), xid)
call check_ncstatus(status)
- tzdim=(/ timeid, zid /)
- txdim=(/ timeid, xid /)
- tzldim=(/ timeid, binsid, zid /)
- tzxdim=(/ timeid, xid, zid /)
- tzxbindim=(/ timeid, binsid, xid, zid /)
+ tzdim=(/ zid, timeid /) !!!!
+ txdim=(/ xid, timeid /) !!!!
+ tzldim=(/ binsid, zid, timeid /) !!!!
+ tzxdim=(/ xid, zid, timeid /) !!!!
+ tzxbindim=(/ binsid, xid, zid, timeid /) !!!!
! Do the dim variables
n_dgs=2
@@ -2063,7 +2177,13 @@
deallocate(varid)
! Do scalars (including time)
+!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
+endif !!!!
+!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
n_dgs=ID_Scalars%nids
+!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
+if (init) then !!!!
+!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
allocate(varid(n_dgs))
status=nf90_redef(ncid)
dim=timeid
@@ -2084,16 +2204,36 @@
status=nf90_enddef(ncid)
+!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
+endif !!!!
+!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
do ivar=1,n_dgs
- status=nf90_put_var(ncid, varid(ivar), &
- scalars(ivar)%data(1:n_dgtimes))
+!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
+ name=scalars(ivar)%name !!!!
+ call sanitize(name) !!!!
+ status=nf90_inq_varid(ncid, name, vid) !!!!
+ call check_ncstatus(status) !!!!
+!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
+ status=nf90_put_var(ncid, vid, & !!!!
+ scalars(ivar)%data(itime), start=(/i_dgtime/))!!!!
call check_ncstatus(status)
end do
+!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
+if (init) then !!!!
+!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
deallocate(varid)
+!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
+endif !!!!
+ !!!!
+write(6,*) 'Writing data @ i_dgtime=', i_dgtime !!!!
+!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
if (nx == 1) then
+!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
+!!!! nx == 1 case not finished! !!!!
+!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
! Do the instantaneous diags (1D)
n_dgs=ID_instant_column%nids
@@ -2144,13 +2284,14 @@
status=nf90_enddef(ncid)
- allocate(field3d(n_dgtimes, max_nbins, nz))
+!!!! TODO
+!!!! allocate(field3d(n_dgtimes, max_nbins, nz))
do ivar=1,n_dgs
do tim=1,n_dgtimes
do iq=1, max_nbins
do k = 1,nz
- field3d(tim,iq,k)= instant_bindgs(ivar)%data(k,iq,tim)
+ field3d(iq,k)= instant_bindgs(ivar)%data(k,iq,itime) !!!!
enddo
enddo
enddo
@@ -2168,6 +2309,9 @@
! Do the instantaneous diags (2D)
n_dgs=ID_instant_2D%nids
+!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
+if (init) then !!!!
+!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
allocate(varid(n_dgs))
status=nf90_redef(ncid)
dim3d=tzxdim
@@ -2186,18 +2330,26 @@
status=nf90_enddef(ncid)
- allocate(field3d(n_dgtimes, nx, nz))
+!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
+endif !!!!
+!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
+ allocate(field3d(nx, nz)) !!!!
do ivar=1,n_dgs
- do tim=1,n_dgtimes
+!!!! do tim=1,n_dgtimes !!!!
do j = 1, nx
do k = 1,nz
- field3d(tim,j,k)= field_mask(k,j)*instant_2D(ivar)%data(k,j,tim) &
+ field3d(j,k)= field_mask(k,j)*instant_2D(ivar)%data(k,j,itime) &
+(1.-field_mask(k,j))*unset_real
enddo
- enddo
+!!!! enddo !!!!
enddo
- status=nf90_put_var(ncid, varid(ivar), field3d)
+!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
+ status=nf90_inq_varid(ncid, & !!!!
+ instant_2D(ivar)%name, vid) !!!!
+ call check_ncstatus(status) !!!!
+!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
+ status=nf90_put_var(ncid, vid, field3d, start=(/1,1,i_dgtime/)) !!!!
call check_ncstatus(status)
@@ -2205,10 +2357,19 @@
deallocate(field3d)
+!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
+if (init) then !!!!
+!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
deallocate(varid)
+!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
+endif !!!!
+!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
! Do the instantaneous bin micro diags (2D)
n_dgs=ID_instant_2Dbindgs%nids
+!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
+if (init) then !!!!
+!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
allocate(varid(n_dgs))
status=nf90_redef(ncid)
dim4d=tzxbindim
@@ -2227,20 +2388,30 @@
status=nf90_enddef(ncid)
- allocate(field4d(n_dgtimes, max_nbins, nx, nz))
+!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
+endif !!!!
+!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
+ allocate(field4d(max_nbins, nx, nz))
do ivar=1,n_dgs
- do tim=1,n_dgtimes
+!!!! do tim=1,n_dgtimes !!!!
do ibin= 1,max_nbins
do j = 1, nx
do k = 1,nz
- field4d(tim,ibin,j,k)= field_mask(k,j)*instant_2Dbindgs(ivar)%data(k,j,ibin,tim) &
+ field4d(ibin,j,k)= field_mask(k,j)*instant_2Dbindgs(ivar)%data(k,j,ibin,itime) & !!!!
+(1.-field_mask(k,j))*unset_real
enddo
enddo
- enddo
+!!!! enddo !!!!
enddo
- status=nf90_put_var(ncid, varid(ivar), field4d)
+
+!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
+ status=nf90_inq_varid(ncid, & !!!!
+ instant_2Dbindgs(ivar)%name, vid) !!!!
+ call check_ncstatus(status) !!!!
+!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
+
+ status=nf90_put_var(ncid, vid, field4d(:,:,:), start=(/1,1,1,i_dgtime/)) !!!!
call check_ncstatus(status)
@@ -2248,10 +2419,19 @@
deallocate(field4d)
+!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
+if (init) then !!!!
+!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
deallocate(varid)
+!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
+endif !!!!
+!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
! Do the instantaneous diags (nx vs time)
n_dgs=ID_instant_column%nids
+!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
+if (init) then !!!!
+!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
allocate(varid(n_dgs))
status=nf90_redef(ncid)
dim2d=txdim
@@ -2270,19 +2450,39 @@
status=nf90_enddef(ncid)
+!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
+endif !!!!
+!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
+
do ivar=1,n_dgs
- status=nf90_put_var(ncid, varid(ivar), &
- transpose(instant_column(ivar)%data(1:nx,1:n_dgtimes)))
+!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
+ status=nf90_inq_varid(ncid, & !!!!
+ instant_column(ivar)%name, vid) !!!!
+ call check_ncstatus(status) !!!!
+!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
+ status=nf90_put_var(ncid, vid, instant_column(ivar)%data(1:nx,itime), start=(/1, i_dgtime/)) !!!!
call check_ncstatus(status)
end do
+!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
+if (init) then !!!!
+!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
deallocate(varid)
+!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
+endif !!!!
+!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
endif
- status=nf90_close(ncid)
+!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
+ status = nf90_sync(ncid) !!!!
+!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
+!!!! status=nf90_close(ncid) !!!!
call check_ncstatus(status)
+!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
+if (init) then !!!!
+!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
! We now write out the full namelist data to file
nmlfile=outfile(1:len_trim(outfile)-3)//'.nml'
@@ -2296,8 +2496,11 @@
write(99, switch)
write(99, addcontrol)
close(99)
-
-
+!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
+i_dgtime = 2 !!!!
+init = .false. !!!!
+endif !!!!
+!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!!
end subroutine write_diagnostics
subroutine check_ncstatus(status, name)
diff -ruN '--exclude=mphys_libcloud_lgr.f90' '--exclude=kida_SC_2D_libcloud_lgr.nml' '--exclude=*~' '--exclude=*.mod' '--exclude=*.o' '--exclude=bin' '--exclude=4A_code' '--exclude=UM_source' '--exclude=.includes' '--exclude=case.used' '--exclude=output' '--exclude=gmon.out' kid_a_setup.orig/src/main.f90 kid_a_setup/src/main.f90
--- kid_a_setup.orig/src/main.f90 2015-06-02 09:23:07.000000000 +0200
+++ kid_a_setup/src/main.f90 2015-08-18 12:19:50.311569067 +0200
@@ -97,7 +97,8 @@
end do
- if (l_write_dgs) call write_diagnostics
+!!!! if (l_write_dgs) call write_diagnostics !!!!
+!!!! included in save_diagnostics_2d !!!!
end subroutine main_loop
diff -ruN '--exclude=mphys_libcloud_lgr.f90' '--exclude=kida_SC_2D_libcloud_lgr.nml' '--exclude=*~' '--exclude=*.mod' '--exclude=*.o' '--exclude=bin' '--exclude=4A_code' '--exclude=UM_source' '--exclude=.includes' '--exclude=case.used' '--exclude=output' '--exclude=gmon.out' kid_a_setup.orig/src/makefile.inc kid_a_setup/src/makefile.inc
--- kid_a_setup.orig/src/makefile.inc 2015-06-02 09:23:07.000000000 +0200
+++ kid_a_setup/src/makefile.inc 2015-08-18 12:19:50.311569067 +0200
@@ -29,7 +29,7 @@
OBJS=$(OBJSF) $(OBJSF90)
-all: defs $(EXECUTABLE)
+all: defs $(SHARED_LIB)
defs:
touch case.used
@@ -49,10 +49,13 @@
$(F90D) -c $< -o $@ $(INCDF)
$(OBJSF90): $(OBJDIR)/%.o: %.f90
- $(F90D) -c $< -o $@ $(INCDF)
+ $(F90D) -c -fPIC $< -o $@ $(INCDF)
$(OBJSF): $(OBJDIR)/%.o: %.f
- $(F90D) -c $< -o $@ $(INCDF)
+ $(F90D) -c -fPIC $< -o $@ $(INCDF)
$(EXECUTABLE): $(OBJS) $(OBJSF90_UM) $(OBJSF90_4A)
$(LD) -o $(EXECDIR)/$(EXECUTABLE) $(OBJDIR)/*.o $(OBJSF90_4A) $(OBJSF90_UM) $(LDFLAGS)
+
+$(SHARED_LIB): $(OBJS) $(OBJPTRUTIL) $(OBJSF90_UM) $(OBJSF90_4A)
+ $(LD) -shared -o $(EXECDIR)/$(SHARED_LIB) $(OBJDIR)/*.o $(OBJSF90_4A) $(OBJSF90_UM) $(LDFLAGS)
diff -ruN '--exclude=mphys_libcloud_lgr.f90' '--exclude=kida_SC_2D_libcloud_lgr.nml' '--exclude=*~' '--exclude=*.mod' '--exclude=*.o' '--exclude=bin' '--exclude=4A_code' '--exclude=UM_source' '--exclude=.includes' '--exclude=case.used' '--exclude=output' '--exclude=gmon.out' kid_a_setup.orig/src/mphys_interface.f90 kid_a_setup/src/mphys_interface.f90
--- kid_a_setup.orig/src/mphys_interface.f90 2015-07-06 19:54:49.000000000 +0200
+++ kid_a_setup/src/mphys_interface.f90 2015-08-18 12:19:50.311569067 +0200
@@ -19,6 +19,7 @@
#if SHIPWAY_MICRO == 1
Use mphys_4A, only: mphys_4A_interface
#endif
+ Use mphys_libcloud_lgr, only: mphys_libcloud_lgr_interface
Use switches
Use column_variables, only: theta, dtheta_adv, dtheta_div
Use pressure_update, only : exner_timestep_upd
@@ -54,6 +55,9 @@
case(imphys_4A) ! Shipway 4A scheme
call mphys_4A_interface
#endif
+ case(imphys_libcloud_lgr) ! libcloudph++: lagrangian scheme (super-droplet)
+ call mphys_libcloud_lgr_interface
+
end select
end subroutine mphys_column
diff -ruN '--exclude=mphys_libcloud_lgr.f90' '--exclude=kida_SC_2D_libcloud_lgr.nml' '--exclude=*~' '--exclude=*.mod' '--exclude=*.o' '--exclude=bin' '--exclude=4A_code' '--exclude=UM_source' '--exclude=.includes' '--exclude=case.used' '--exclude=output' '--exclude=gmon.out' kid_a_setup.orig/src/namelists.f90 kid_a_setup/src/namelists.f90
--- kid_a_setup.orig/src/namelists.f90 2015-07-06 19:56:43.000000000 +0200
+++ kid_a_setup/src/namelists.f90 2015-08-18 12:30:04.475537323 +0200
@@ -177,6 +177,9 @@
case('4A')
imphys=imphys_4A
mphys_id='4A'
+ case('libcloud_lgr')
+ imphys=imphys_libcloud_lgr
+ mphys_id='libcloud_lgr'
case default
print*, 'Mphys scheme not recognized: ', mphys_scheme
print*, 'Did you mean:'
diff -ruN '--exclude=mphys_libcloud_lgr.f90' '--exclude=kida_SC_2D_libcloud_lgr.nml' '--exclude=*~' '--exclude=*.mod' '--exclude=*.o' '--exclude=bin' '--exclude=4A_code' '--exclude=UM_source' '--exclude=.includes' '--exclude=case.used' '--exclude=output' '--exclude=gmon.out' kid_a_setup.orig/src/switches.f90 kid_a_setup/src/switches.f90
--- kid_a_setup.orig/src/switches.f90 2015-06-02 09:23:07.000000000 +0200
+++ kid_a_setup/src/switches.f90 2015-08-18 12:19:50.315569067 +0200
@@ -96,7 +96,8 @@
,imphys_um7_3 =9 & ! UM test: Jonathan Wilkinson
,imphys_wsm6 =10 & ! WSM6 scheme
,imphys_wdm6 =11 & ! WDM6 scheme
- ,imphys_4A =12 ! Shipway scheme
+ ,imphys_4A =12 & ! Shipway scheme
+ ,imphys_libcloud_lgr =44 ! libcloudph++: lagrangian scheme (super-droplet)
! Integer switches to choose input data type and/or test case
integer, parameter :: &