Better Docco is a not quick-and-dirty, hundred-line-long, literate-programming-style documentation generator based on Docco. For more information, see:
https://github.com/igoramadas/betterdocco
Better Docco will use the full path of source files on the menu and filenames. So you can have for instance a index.coffee under /mymodule and another index.coffee under /anothermodule and have both documented at the same batch.
$ sudo npm install -g betterdocco
$ betterdocco [options] FILES
Options:
-h, --help output usage information
-V, --version output the version number
-l, --layout [layout] choose a built-in layouts (parallel, linear)
-c, --css [file] use a custom css file
-o, --output [path] use a custom output path
-t, --template [file] use a custom .jst template
-e, --extension [ext] use the given file extension for all inputs
-L, --languages [file] use a custom languages.json
-m, --marked [file] use custom marked options