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igs-jcsilva-lab

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  1. ISCA ISCA Public

    ISCA is an assembly pipeline that performs targeted assembly of individual loci using WGS reads, reference genome assemblies, and GFF3 reference annotation.

    Python 3 2

  2. variant-calling-pipelines variant-calling-pipelines Public

    Pipeline for calling snps and small indels using short-read whole genome sequencing platforms

    Shell

  3. long-read-assembly-pipelines long-read-assembly-pipelines Public

    Scripts to generate and analyze assemblies using long-read sequencing

    Shell

  4. epitope-predictions epitope-predictions Public

  5. structural-variant-pipelines structural-variant-pipelines Public

    Scripts to identiy high-confidence structural variants from <i>Plasmodium<i> assemblies.

    Shell

  6. mn-Moser-2020-InfectGenetEvol mn-Moser-2020-InfectGenetEvol Public

    Shell

Repositories

Showing 7 of 7 repositories
  • ISCA Public

    ISCA is an assembly pipeline that performs targeted assembly of individual loci using WGS reads, reference genome assemblies, and GFF3 reference annotation.

    igs-jcsilva-lab/ISCA’s past year of commit activity
    Python 3 2 2 1 Updated Jul 12, 2024
  • GC3 Public
    igs-jcsilva-lab/GC3’s past year of commit activity
    R 0 0 0 0 Updated Apr 16, 2023
  • long-read-assembly-pipelines Public

    Scripts to generate and analyze assemblies using long-read sequencing

    igs-jcsilva-lab/long-read-assembly-pipelines’s past year of commit activity
    Shell 0 0 0 0 Updated Jun 16, 2020
  • igs-jcsilva-lab/mn-Moser-2020-InfectGenetEvol’s past year of commit activity
    Shell 0 0 0 0 Updated Feb 23, 2020
  • variant-calling-pipelines Public

    Pipeline for calling snps and small indels using short-read whole genome sequencing platforms

    igs-jcsilva-lab/variant-calling-pipelines’s past year of commit activity
    Shell 0 0 0 0 Updated Feb 15, 2020
  • structural-variant-pipelines Public

    Scripts to identiy high-confidence structural variants from <i>Plasmodium<i> assemblies.

    igs-jcsilva-lab/structural-variant-pipelines’s past year of commit activity
    Shell 0 0 0 0 Updated Feb 15, 2020
  • igs-jcsilva-lab/epitope-predictions’s past year of commit activity
    0 0 0 0 Updated Oct 20, 2019

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