can set indel parameters at cmd line

ihh · Aug 13, 2011 · 6feca25 · 6feca25
1 parent ed2d854
commit 6feca25
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diff --git a/aclocal.m4 b/aclocal.m4
@@ -1,7 +1,7 @@
-# generated automatically by aclocal 1.11 -*- Autoconf -*-
+# generated automatically by aclocal 1.10.1 -*- Autoconf -*-
 
 # Copyright (C) 1996, 1997, 1998, 1999, 2000, 2001, 2002, 2003, 2004,
-# 2005, 2006, 2007, 2008, 2009  Free Software Foundation, Inc.
+# 2005, 2006, 2007, 2008  Free Software Foundation, Inc.
 # This file is free software; the Free Software Foundation
 # gives unlimited permission to copy and/or distribute it,
 # with or without modifications, as long as this notice is preserved.

diff --git a/src/protpal/exactMatch.cc b/src/protpal/exactMatch.cc
@@ -1,11 +1,12 @@
 #include<iostream>
-#include "utils.h"
 #include <ctype.h>
 #include<set>
 #include<map>
 #include<vector>
 #include<string>
-#include "exactMatch.h"
+
+#include "protpal/exactMatch.h"
+#include "protpal/utils.h"
 
 using namespace std;
 

diff --git a/src/protpal/exactMatch.h b/src/protpal/exactMatch.h
@@ -1,11 +1,12 @@
+#ifndef EXACTMATCH_H
+#define EXACTMATCH_H
 #include<iostream>
-#include "utils.h"
 #include<set>
 #include<map>
 #include<vector>
 #include<string>
-#ifndef EXACTMATCH_H
-#define EXACTMATCH_H
+
+#include "protpal/utils.h"
 
 using namespace std;