ENH: add license

dismod_mr/__init__.py

@@ -1,3 +1,22 @@
+
+
+# Copyright 2008-2012 University of Washington
+# 
+# This file is part of DisMod-MR.
+# 
+# DisMod-MR is free software: you can redistribute it and/or modify
+# it under the terms of the GNU Affero General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+#
+# DisMod-MR is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU Affero General Public License for more details.
+# 
+# You should have received a copy of the GNU Affero General Public License
+# along with DisMod-MR.  If not, see <http://www.gnu.org/licenses/>.
+
 import data, plot, model, fit
 
 from data import load

dismod_mr/data.py

@@ -1,3 +1,22 @@
+
+
+# Copyright 2008-2012 University of Washington
+# 
+# This file is part of DisMod-MR.
+# 
+# DisMod-MR is free software: you can redistribute it and/or modify
+# it under the terms of the GNU Affero General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+#
+# DisMod-MR is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU Affero General Public License for more details.
+# 
+# You should have received a copy of the GNU Affero General Public License
+# along with DisMod-MR.  If not, see <http://www.gnu.org/licenses/>.
+
 """ Data Handling Class for DisMod-MR"""
 
 import pandas as pd

dismod_mr/fit.py

@@ -1,3 +1,22 @@
+
+
+# Copyright 2008-2012 University of Washington
+# 
+# This file is part of DisMod-MR.
+# 
+# DisMod-MR is free software: you can redistribute it and/or modify
+# it under the terms of the GNU Affero General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+#
+# DisMod-MR is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU Affero General Public License for more details.
+# 
+# You should have received a copy of the GNU Affero General Public License
+# along with DisMod-MR.  If not, see <http://www.gnu.org/licenses/>.
+
 """ Module for DisMod-MR model fitting methods"""
 
 import sys, time

dismod_mr/model/__init__.py

@@ -1,3 +1,22 @@
+
+
+# Copyright 2008-2012 University of Washington
+# 
+# This file is part of DisMod-MR.
+# 
+# DisMod-MR is free software: you can redistribute it and/or modify
+# it under the terms of the GNU Affero General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+#
+# DisMod-MR is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU Affero General Public License for more details.
+# 
+# You should have received a copy of the GNU Affero General Public License
+# along with DisMod-MR.  If not, see <http://www.gnu.org/licenses/>.
+
 import likelihood, spline, age_groups, priors, covariates, process
 from process import age_specific_rate as asr, consistent
 from covariates import predict_for

dismod_mr/model/age_groups.py

@@ -1,3 +1,22 @@
+
+
+# Copyright 2008-2012 University of Washington
+# 
+# This file is part of DisMod-MR.
+# 
+# DisMod-MR is free software: you can redistribute it and/or modify
+# it under the terms of the GNU Affero General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+#
+# DisMod-MR is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU Affero General Public License for more details.
+# 
+# You should have received a copy of the GNU Affero General Public License
+# along with DisMod-MR.  If not, see <http://www.gnu.org/licenses/>.
+
 """ Age integrating models"""
 
 import numpy as np, pymc as mc

dismod_mr/model/covariates.py

@@ -1,3 +1,22 @@
+
+
+# Copyright 2008-2012 University of Washington
+# 
+# This file is part of DisMod-MR.
+# 
+# DisMod-MR is free software: you can redistribute it and/or modify
+# it under the terms of the GNU Affero General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+#
+# DisMod-MR is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU Affero General Public License for more details.
+# 
+# You should have received a copy of the GNU Affero General Public License
+# along with DisMod-MR.  If not, see <http://www.gnu.org/licenses/>.
+
 """ Covariate models"""
 
 import numpy as np, pymc as mc, pandas as pd, networkx as nx

dismod_mr/model/likelihood.py

@@ -1,3 +1,22 @@
+
+
+# Copyright 2008-2012 University of Washington
+# 
+# This file is part of DisMod-MR.
+# 
+# DisMod-MR is free software: you can redistribute it and/or modify
+# it under the terms of the GNU Affero General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+#
+# DisMod-MR is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU Affero General Public License for more details.
+# 
+# You should have received a copy of the GNU Affero General Public License
+# along with DisMod-MR.  If not, see <http://www.gnu.org/licenses/>.
+
 """ Several rate models"""
 
 import pylab as pl

dismod_mr/model/ode.py

@@ -1,3 +1,22 @@
+
+
+# Copyright 2008-2012 University of Washington
+# 
+# This file is part of DisMod-MR.
+# 
+# DisMod-MR is free software: you can redistribute it and/or modify
+# it under the terms of the GNU Affero General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+#
+# DisMod-MR is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU Affero General Public License for more details.
+# 
+# You should have received a copy of the GNU Affero General Public License
+# along with DisMod-MR.  If not, see <http://www.gnu.org/licenses/>.
+
 # $begin dismod_ode$$ $newlinech #$$
 # $spell
 #	subvector

dismod_mr/model/priors.py

@@ -1,3 +1,22 @@
+
+
+# Copyright 2008-2012 University of Washington
+# 
+# This file is part of DisMod-MR.
+# 
+# DisMod-MR is free software: you can redistribute it and/or modify
+# it under the terms of the GNU Affero General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+#
+# DisMod-MR is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU Affero General Public License for more details.
+# 
+# You should have received a copy of the GNU Affero General Public License
+# along with DisMod-MR.  If not, see <http://www.gnu.org/licenses/>.
+
 """ Expert prior models"""
 
 import numpy as np, pymc as mc

dismod_mr/model/process.py

@@ -1,3 +1,22 @@
+
+
+# Copyright 2008-2012 University of Washington
+# 
+# This file is part of DisMod-MR.
+# 
+# DisMod-MR is free software: you can redistribute it and/or modify
+# it under the terms of the GNU Affero General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+#
+# DisMod-MR is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU Affero General Public License for more details.
+# 
+# You should have received a copy of the GNU Affero General Public License
+# along with DisMod-MR.  If not, see <http://www.gnu.org/licenses/>.
+
 """ Dismod-MR model creation methods"""
 
 import numpy as np, pymc as mc, scipy.interpolate

dismod_mr/model/spline.py

@@ -1,3 +1,22 @@
+
+
+# Copyright 2008-2012 University of Washington
+# 
+# This file is part of DisMod-MR.
+# 
+# DisMod-MR is free software: you can redistribute it and/or modify
+# it under the terms of the GNU Affero General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+#
+# DisMod-MR is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU Affero General Public License for more details.
+# 
+# You should have received a copy of the GNU Affero General Public License
+# along with DisMod-MR.  If not, see <http://www.gnu.org/licenses/>.
+
 """ Spline model used for age-specific rates"""
 
 import pylab as pl

dismod_mr/plot.py

@@ -1,3 +1,22 @@
+
+
+# Copyright 2008-2012 University of Washington
+# 
+# This file is part of DisMod-MR.
+# 
+# DisMod-MR is free software: you can redistribute it and/or modify
+# it under the terms of the GNU Affero General Public License as published by
+# the Free Software Foundation, either version 3 of the License, or
+# (at your option) any later version.
+#
+# DisMod-MR is distributed in the hope that it will be useful,
+# but WITHOUT ANY WARRANTY; without even the implied warranty of
+# MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE.  See the
+# GNU Affero General Public License for more details.
+# 
+# You should have received a copy of the GNU Affero General Public License
+# along with DisMod-MR.  If not, see <http://www.gnu.org/licenses/>.
+
 """ Module for DisMod-MR graphics"""
 
 import pylab as pl