This library provides a variety of features for integrating ImageJ with MATLAB, including:
- ImageJMATLAB - An entry point for launching ImageJ from within MATLAB and ensuring all ImageJ dependencies are loaded in the MATLAB class loader.
- IJM commands - When ImageJ is started within MATLAB, utility methods for converting between ImageJ and MATLAB data structures will be available. Run
IJM.helpfor a list of commands.
- MATLAB dataset conversion - ImageJ Datasets can now be converted, using the
ConvertService, to the Matlab Control MatlabNumericArray types. These arrays can then be passed to a running MATLAB instance as a matrix.
- MATLAB array preprocessor - MATLAB scripts (.m) can now have
@matrixannotations. This will automatically take the active ImageJ Dataset and convert it to a matrix in MATLAB.