The goal of mosdef
is to provides functionality to run a number of tasks in the differential expression analysis workflow.
This encompasses the most widely used steps, from running various enrichment analysis tools with a unified interface to creating plots and beautifying table components linking to external websites and databases.
This streamlines the generation of comprehensive analysis reports.
mosdef
can be found on Bioconductor
(https://www.bioconductor.org/packages/mosdef).
You can install the version of mosdef
which is ob Bioconductor with these commands:
if (!require("BiocManager")) {
install.packages("BiocManager")
}
BiocManager::install("mosdef")
Alternatively, you can install the development version of mosdef
from GitHub with:
library("remotes")
remotes::install_github("imbeimainz/mosdef",
dependencies = TRUE, build_vignettes = TRUE)
You can find the rendered version of the documentation of mosdef
at
the project website https://imbeimainz.github.io/mosdef, created with pkgdown
.
If you encounter a bug, have usage questions, or want to share ideas and functionality to make this package better, feel free to file an issue.
Please note that the mosdef project is released with a Contributor Code of Conduct. By contributing to this project, you agree to abide by its terms.
MIT