prepare release 1.0.3 #28
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…uses the short version of chromosome identifiers
…EBUG mode - log file can now be saved at a custom location - workdir now points to a temporary directory if not specified
…atabases. Added TODO to handle such things in general to not break the program if new terms are introduced.
…nt representation to make comparison with inhouse samples easier.
…IFICATION NEEDED)
…iles according to inheritance mode if TRIO sample analysis
…dd functionality to obtain the percentage of missing features per variant.
…is warning to happen sometimes)
…ntations. Optimize weighting in prioritization step.
- ADDED binary feature indicating the impact class of the variant - IMPROVED various filter steps in the prioritization and scoring part - EXCHHANGED the splicing scores (dbscSNV) with SpliceAI - IMPROVED missing value imputation - IMPROVED InDel combination
…). Update documentation.
ADD new parameter --top_rank to specify the maximum rank if only the top results are reported Refactoring was done
…ipt filtering when choosing the right feature annotation if multiple transcripts where annotated for a variant.
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