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collection.bioimage.io.yaml
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collection.bioimage.io.yaml
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format_version: 0.2.2
type: collection
name: ImJoy Collection
tags: [imjoy, bioimage.io]
description: "Resources for BioImgage.IO curated by the ImJoy Team."
documentation: https://imjoy.io/docs
config:
id: imjoy
name: ImJoy
tags:
- imjoy
logo: https://imjoy.io/static/img/imjoy-icon.svg
icon: https://imjoy.io/static/img/imjoy-icon.svg
splash_title: ImJoy
splash_subtitle: Deep Learning Made Easy!
splash_feature_list:
- Minimal and flexible plugin powered web application
- Server-less progressive web application with offline support
- Rich and interactive user interface powered by web technologies
explore_button_text: Start Exploring
background_image: static/img/zoo-background.svg
resource_types:
- notebook
- application
default_type: application
url_root: https://raw.githubusercontent.com/imjoy-team/bioimage-io-models/master
docs: https://imjoy.io/docs/#/
contact:
- name: Wei Ouyang
email: wei.ouyang@scilifelab.se
github: oeway
affiliation:
- name: KTH
url: https://www.kth.se/en
collection:
- id: GenericBioEngineApp
name: GenericBioEngineApp
type: application
source: https://raw.githubusercontent.com/imjoy-team/bioimage-io-models/master/src/generic-bioengine-app.imjoy.html
- id: BioImageIO-Packager
name: BioImageIO-Packager
type: application
source: https://raw.githubusercontent.com/imjoy-team/bioimage-io-models/master/src/bioimageio-packager.imjoy.html
# - id: Notebook Preview
# type: application
# source: https://raw.githubusercontent.com/bioimage-io/nbpreview/master/notebook-preview.imjoy.html
- id: ImJoy
name: ImJoy
type: application
source: https://raw.githubusercontent.com/imjoy-team/bioimage-io-models/master/src/imjoy-app.imjoy.html
- id: ImageJ.JS
type: application
source: https://raw.githubusercontent.com/imjoy-team/bioimage-io-models/master/src/imagej-js.imjoy.html
# - id: ImJoyFiddle
# type: application
# source: https://raw.githubusercontent.com/imjoy-team/bioimage-io-models/master/src/imjoy-fiddle.imjoy.html
- id: vizarr
name: vizarr
type: application
source: https://raw.githubusercontent.com/imjoy-team/bioimage-io-models/master/src/vizarr.imjoy.html
- id: HPA-Single-Cell
name: HPA Single Cell
source: https://raw.githubusercontent.com/imjoy-team/bioimage-io-models/master/src/hpa-single-cell-bioengine.imjoy.html
# - id: CellPose
# type: application
# source: https://raw.githubusercontent.com/imjoy-team/bioimage-io-models/master/src/cellpose.imjoy.html
- id: LuCa-7color
type: dataset
name: LuCa-7color
description: Sample PerkinElmer Vectra QPTIFF files (c) PerkinElmer (http://www.perkinelmer.com)
authors:
- name: "Perkin Elmer"
tags: [OME-TIFF]
license: "CC-BY-4.0"
download_url: https://downloads.openmicroscopy.org/images/Vectra-QPTIFF/perkinelmer/PKI_scans/LuCa-7color_Scan1.qptiff
source: https://viv-demo.storage.googleapis.com/LuCa-7color_Scan1/data.zarr/0
covers:
- https://raw.githubusercontent.com/imjoy-team/bioimage-io-models/master/asset/LuCa-7color_Scan1.png
links:
- vizarr