Skip to content

Commit

Permalink
Merge pull request #300 from cmaumet/namespace_search_volume
Browse files Browse the repository at this point in the history 
Search volume in units (and in vertices) in nidm namespace
  • Loading branch information
Camille Maumet committed Apr 14, 2015
2 parents e8db23c + a0f3e3b commit 6b63819
Show file tree
Hide file tree
Showing 12 changed files with 39 additions and 25 deletions.
7 changes: 5 additions & 2 deletions doc/content/specs/nidm-results_dev.html
View file
Expand Up @@ -1748,12 +1748,15 @@ <h1 label="NIDM_0000068">nidm:'Search Space Mask Map'</h1>
<li><a title="NIDM_0000104">nidm:'in Coordinate Space'</a></span>: an <em class="rfc2119" title="OPTIONAL">OPTIONAL</em> property of a DataArray to associate a CoordinateSpace with a physical file.(range <a title="NIDM_0000016">nidm:'Coordinate Space'</a>)</li>
<li><a title="NIDM_0000106">nidm:'is User Defined'</a></span>: an <em class="rfc2119" title="OPTIONAL">OPTIONAL</em> a binary flag defining whether the mask was specified by the user (true) or automatically generated during the analysis (false).(range <a title="boolean" href ="http://www.w3.org/2001/XMLSchema#boolean">xsd:boolean</a>)</li>
<li><a title="NIDM_0000120"><dfn title="NIDM_0000120">nidm:'random Field Stationarity'</dfn></a></span>: an <em class="rfc2119" title="OPTIONAL">OPTIONAL</em> is the random field assumed to be stationary across the entire search volume?.(range <a title="boolean" href ="http://www.w3.org/2001/XMLSchema#boolean">xsd:boolean</a>)</li>
<li><a title="NIDM_0000121"><dfn title="NIDM_0000121">nidm:'search Volume In Voxels'</dfn></a></span>: an <em class="rfc2119" title="OPTIONAL">OPTIONAL</em> total number of voxels within the search volume.(range <a title="positiveInteger" href ="http://www.w3.org/2001/XMLSchema#positiveInteger">xsd:positiveInteger</a>)</li>
<li><a title="NIDM_0000121"><dfn title="NIDM_0000121">nidm:'search Volume In Voxels'</dfn></a></span>: an <em class="rfc2119" title="OPTIONAL">OPTIONAL</em> total number of voxels within the search volume.(range <a title="positiveInteger" href ="http://www.w3.org/2001/XMLSchema#positiveInteger">xsd:positiveInteger</a>)</li>
<li><a title="NIDM_0000136"><dfn title="NIDM_0000136">nidm:'search Volume In Units'</dfn></a></span>: an <em class="rfc2119" title="OPTIONAL">OPTIONAL</em> the volume of the searched region in units determined by the current coordinate space units (e.g., mm^3 for axis units of mm in a three dimensional image, sec.Hz for a time by frequency two dimensional image).(range <a title="float" href ="http://www.w3.org/2001/XMLSchema#float">xsd:float</a>)</li>
<li><a title="NIDM_0000137"><dfn title="NIDM_0000137">nidm:'search Volume In Vertices'</dfn></a></span>: an <em class="rfc2119" title="OPTIONAL">OPTIONAL</em> total number of vertices within the search volume.(range <a title="float" href ="http://www.w3.org/2001/XMLSchema#float">xsd:float</a>)</li>
</ul>
</div>
<pre class='example highlight'>@prefix nidm_SearchSpaceMaskMap: &lt;http://purl.org/nidash/nidm#NIDM_0000068&gt; .
@prefix nidm_inCoordinateSpace: &lt;http://purl.org/nidash/nidm#NIDM_0000104&gt; .
@prefix nidm_searchVolumeInVoxels: &lt;http://purl.org/nidash/nidm#NIDM_0000121&gt; .
@prefix nidm_searchVolumeInUnits: &lt;http://purl.org/nidash/nidm#NIDM_0000136&gt; .
@prefix nidm_randomFieldStationarity: &lt;http://purl.org/nidash/nidm#NIDM_0000120&gt; .


Expand All @@ -1770,7 +1773,7 @@ <h1 label="NIDM_0000068">nidm:'Search Space Mask Map'</h1>
spm:smallestSignifClusterSizeInVoxelsFWE05 "1"^^xsd:int ;
spm:smallestSignifClusterSizeInVoxelsFDR05 "3"^^xsd:int ;
nidm_searchVolumeInVoxels: "65593"^^xsd:int ;
spm:searchVolumeInUnits "1771011"^^xsd:float ;
nidm_searchVolumeInUnits: "1771011"^^xsd:float ;
spm:reselSize "22.9229643140043"^^xsd:float ;
spm:searchVolumeInResels "2552.68032521656"^^xsd:float ;
spm:searchVolumeReselsGeometry "[3, 72.3216126440484, 850.716735116472, 2552.68032521656]"^^xsd:string ;
Expand Down
8 changes: 4 additions & 4 deletions nidm/nidm-results/spm/README.md
View file
@@ -1,9 +1,9 @@

Prov store: https://provenance.ecs.soton.ac.uk/store/documents/77109/
Prov store: https://provenance.ecs.soton.ac.uk/store/documents/77233/

Alternative serialisations: [json](https://provenance.ecs.soton.ac.uk/store/documents/77109.json), [turtle](https://provenance.ecs.soton.ac.uk/store/documents/77109.ttl),
Graph: [svg](https://provenance.ecs.soton.ac.uk/store/documents/77109.svg), [PDF](https://provenance.ecs.soton.ac.uk/store/documents/77109.pdf), [png](https://provenance.ecs.soton.ac.uk/store/documents/77109.png)
Alternative serialisations: [json](https://provenance.ecs.soton.ac.uk/store/documents/77233.json), [turtle](https://provenance.ecs.soton.ac.uk/store/documents/77233.ttl),
Graph: [svg](https://provenance.ecs.soton.ac.uk/store/documents/77233.svg), [PDF](https://provenance.ecs.soton.ac.uk/store/documents/77233.pdf), [png](https://provenance.ecs.soton.ac.uk/store/documents/77233.png)

![Prov Graph](https://provenance.ecs.soton.ac.uk/store/documents/77109.png)
![Prov Graph](https://provenance.ecs.soton.ac.uk/store/documents/77233.png)

8 changes: 4 additions & 4 deletions nidm/nidm-results/spm/example001/README.md
View file
@@ -1,9 +1,9 @@

Prov store: https://provenance.ecs.soton.ac.uk/store/documents/77114/
Prov store: https://provenance.ecs.soton.ac.uk/store/documents/77234/

Alternative serialisations: [json](https://provenance.ecs.soton.ac.uk/store/documents/77114.json), [turtle](https://provenance.ecs.soton.ac.uk/store/documents/77114.ttl),
Graph: [svg](https://provenance.ecs.soton.ac.uk/store/documents/77114.svg), [PDF](https://provenance.ecs.soton.ac.uk/store/documents/77114.pdf), [png](https://provenance.ecs.soton.ac.uk/store/documents/77114.png)
Alternative serialisations: [json](https://provenance.ecs.soton.ac.uk/store/documents/77234.json), [turtle](https://provenance.ecs.soton.ac.uk/store/documents/77234.ttl),
Graph: [svg](https://provenance.ecs.soton.ac.uk/store/documents/77234.svg), [PDF](https://provenance.ecs.soton.ac.uk/store/documents/77234.pdf), [png](https://provenance.ecs.soton.ac.uk/store/documents/77234.png)

![Prov Graph](https://provenance.ecs.soton.ac.uk/store/documents/77114.png)
![Prov Graph](https://provenance.ecs.soton.ac.uk/store/documents/77234.png)

3 changes: 2 additions & 1 deletion nidm/nidm-results/spm/example001/example001_spm_results.provn
View file
Expand Up @@ -33,6 +33,7 @@ prefix nidm_withEstimationMethod <http://purl.org/nidash/nidm#NIDM_0000134>
prefix nidm_StatisticMap <http://purl.org/nidash/nidm#NIDM_0000076>
prefix nidm_minDistanceBetweenPeaks <http://purl.org/nidash/nidm#NIDM_0000109>
prefix nlx <http://neurolex.org/wiki/>
prefix nidm_searchVolumeInUnits <http://purl.org/nidash/nidm#NIDM_0000136>
prefix nidm_ModelParametersEstimation <http://purl.org/nidash/nidm#NIDM_0000056>
prefix nidm_inCoordinateSpace <http://purl.org/nidash/nidm#NIDM_0000104>
prefix nidm_hasConnectivityCriterion <http://purl.org/nidash/nidm#NIDM_0000099>
Expand Down Expand Up @@ -111,7 +112,7 @@ entity(niiri:maximum_intensity_projection_id,[prov:type = 'dctype:Image', prov:l
entity(niiri:coordinate_0004,[prov:type = 'nidm:NIDM_0000015', prov:label = "Coordinate: 0004", nidm:NIDM_0000086 = "[63, -13, -4]" %% xsd:string])
entity(niiri:coordinate_0001,[prov:type = 'nidm:NIDM_0000015', prov:label = "Coordinate: 0001", nidm:NIDM_0000086 = "[-60, -25, 11]" %% xsd:string])
entity(niiri:coordinate_0002,[prov:type = 'nidm:NIDM_0000015', prov:label = "Coordinate: 0002", nidm:NIDM_0000086 = "[-42, -31, 11]" %% xsd:string])
entity(niiri:search_space_mask_id,[prov:type = 'nidm:NIDM_0000068', prov:label = "Search Space Mask Map", prov:location = "file://./SearchSpaceMask.nii.gz" %% xsd:anyURI, nfo:fileName = "SearchSpaceMask.nii.gz" %% xsd:string, dct:format = "image/nifti" %% xsd:string, nidm:NIDM_0000104 = 'niiri:coordinate_space_id_1', spm:expectedNumberOfVoxelsPerCluster = "4.02834655908613" %% xsd:float, spm:expectedNumberOfClusters = "0.0512932943875478" %% xsd:float, spm:heightCriticalThresholdFWE05 = "4.85241745689539" %% xsd:float, spm:heightCriticalThresholdFDR05 = "5.7639536857605" %% xsd:float, spm:smallestSignifClusterSizeInVoxelsFWE05 = "12" %% xsd:int, spm:smallestSignifClusterSizeInVoxelsFDR05 = "29" %% xsd:int, nidm:NIDM_0000121 = "69306" %% xsd:int, spm:searchVolumeInUnits = "1871262" %% xsd:float, spm:reselSize = "132.907586178202" %% xsd:float, spm:searchVolumeInResels = "467.07642343881" %% xsd:float, spm:searchVolumeReselsGeometry = "[7, 42.96312274763, 269.40914815306, 467.07642343881]" %% xsd:string, spm:noiseFWHMInVoxels = "[5.41278985910694, 5.43638957240286, 4.51666658877481]" %% xsd:string, spm:noiseFWHMInUnits = "[16.2383695773208, 16.3091687172086, 13.5499997663244]" %% xsd:string, nidm:NIDM_0000120 = "true" %% xsd:boolean, crypto:sha512 = "932fd9f0d55e9822748f4a9b35a0a7f0fe442f3e061e2eda48c2617a2938df50ea84deca8de0725641a0105b712a80a0c8931df9bdf3bef788b1041379d00875" %% xsd:string])
entity(niiri:search_space_mask_id,[prov:type = 'nidm:NIDM_0000068', prov:label = "Search Space Mask Map", prov:location = "file://./SearchSpaceMask.nii.gz" %% xsd:anyURI, nfo:fileName = "SearchSpaceMask.nii.gz" %% xsd:string, dct:format = "image/nifti" %% xsd:string, nidm:NIDM_0000104 = 'niiri:coordinate_space_id_1', spm:expectedNumberOfVoxelsPerCluster = "4.02834655908613" %% xsd:float, spm:expectedNumberOfClusters = "0.0512932943875478" %% xsd:float, spm:heightCriticalThresholdFWE05 = "4.85241745689539" %% xsd:float, spm:heightCriticalThresholdFDR05 = "5.7639536857605" %% xsd:float, spm:smallestSignifClusterSizeInVoxelsFWE05 = "12" %% xsd:int, spm:smallestSignifClusterSizeInVoxelsFDR05 = "29" %% xsd:int, nidm:NIDM_0000121 = "69306" %% xsd:int, nidm:NIDM_0000136 = "1871262" %% xsd:float, spm:reselSize = "132.907586178202" %% xsd:float, spm:searchVolumeInResels = "467.07642343881" %% xsd:float, spm:searchVolumeReselsGeometry = "[7, 42.96312274763, 269.40914815306, 467.07642343881]" %% xsd:string, spm:noiseFWHMInVoxels = "[5.41278985910694, 5.43638957240286, 4.51666658877481]" %% xsd:string, spm:noiseFWHMInUnits = "[16.2383695773208, 16.3091687172086, 13.5499997663244]" %% xsd:string, nidm:NIDM_0000120 = "true" %% xsd:boolean, crypto:sha512 = "932fd9f0d55e9822748f4a9b35a0a7f0fe442f3e061e2eda48c2617a2938df50ea84deca8de0725641a0105b712a80a0c8931df9bdf3bef788b1041379d00875" %% xsd:string])
entity(niiri:beta_map_id_2,[prov:type = 'nidm:NIDM_0000061', prov:label = "Beta Map 2", nidm:NIDM_0000104 = 'niiri:coordinate_space_id_1'])
entity(niiri:coordinate_space_id_1,[prov:type = 'nidm:NIDM_0000016', prov:label = "Coordinate space 1", nidm:NIDM_0000132 = "[[-3, 0, 0, 78],[0, 3, 0, -112],[0, 0, 3, -70],[0, 0, 0, 1]]" %% xsd:string, nidm:NIDM_0000133 = "['mm', 'mm', 'mm']" %% xsd:string, nidm:NIDM_0000131 = "[3, 3, 3]" %% xsd:string, nidm:NIDM_0000105 = 'nidm:NIDM_0000051', nidm:NIDM_0000112 = "3" %% xsd:int, nidm:NIDM_0000090 = "[53,63,52]" %% xsd:string])
entity(niiri:residual_mean_squares_map_id,[prov:type = 'nidm:NIDM_0000066', prov:label = "Residual Mean Squares Map", prov:location = "file://./ResidualMeanSquares.nii.gz" %% xsd:anyURI, nfo:fileName = "ResidualMeanSquares.nii.gz" %% xsd:string, dct:format = "image/nifti" %% xsd:string, nidm:NIDM_0000104 = 'niiri:coordinate_space_id_1', crypto:sha512 = "84cd0e608b8763307a1166b88761291e552838d85b58334a69a286060f6489a3b0929a940c3ccac883803455118787ea32e0bb5a6d236a5d6e9e8b6a9f918a6b" %% xsd:string])
Expand Down
3 changes: 2 additions & 1 deletion nidm/nidm-results/spm/example001/example001_spm_results.ttl
View file
Expand Up @@ -86,6 +86,7 @@
@prefix nidm_softwareVersion: <http://purl.org/nidash/nidm#NIDM_0000122> .
@prefix nidm_SearchSpaceMaskMap: <http://purl.org/nidash/nidm#NIDM_0000068> .
@prefix nidm_searchVolumeInVoxels: <http://purl.org/nidash/nidm#NIDM_0000121> .
@prefix nidm_searchVolumeInUnits: <http://purl.org/nidash/nidm#NIDM_0000136> .
@prefix nidm_randomFieldStationarity: <http://purl.org/nidash/nidm#NIDM_0000120> .
@prefix nidm_SignificantCluster: <http://purl.org/nidash/nidm#NIDM_0000070> .
@prefix nidm_clusterLabelId: <http://purl.org/nidash/nidm#NIDM_0000082> .
Expand Down Expand Up @@ -482,7 +483,7 @@ niiri:search_space_mask_id a prov:Entity , nidm_SearchSpaceMaskMap: ;
spm:smallestSignifClusterSizeInVoxelsFWE05 "12"^^xsd:int ;
spm:smallestSignifClusterSizeInVoxelsFDR05 "29"^^xsd:int ;
nidm_searchVolumeInVoxels: "69306"^^xsd:int ;
spm:searchVolumeInUnits "1871262"^^xsd:float ;
nidm_searchVolumeInUnits: "1871262"^^xsd:float ;
spm:reselSize "132.907586178202"^^xsd:float ;
spm:searchVolumeInResels "467.07642343881"^^xsd:float ;
spm:searchVolumeReselsGeometry "[7, 42.96312274763, 269.40914815306, 467.07642343881]"^^xsd:string ;
Expand Down
3 changes: 2 additions & 1 deletion nidm/nidm-results/spm/spm_results.provn
View file
Expand Up @@ -35,6 +35,7 @@ prefix nidm_withEstimationMethod <http://purl.org/nidash/nidm#NIDM_0000134>
prefix nidm_StatisticMap <http://purl.org/nidash/nidm#NIDM_0000076>
prefix nidm_minDistanceBetweenPeaks <http://purl.org/nidash/nidm#NIDM_0000109>
prefix nlx <http://neurolex.org/wiki/>
prefix nidm_searchVolumeInUnits <http://purl.org/nidash/nidm#NIDM_0000136>
prefix nidm_ModelParametersEstimation <http://purl.org/nidash/nidm#NIDM_0000056>
prefix nidm_inCoordinateSpace <http://purl.org/nidash/nidm#NIDM_0000104>
prefix nidm_hasConnectivityCriterion <http://purl.org/nidash/nidm#NIDM_0000099>
Expand Down Expand Up @@ -111,7 +112,7 @@ entity(niiri:coordinate_0004,[prov:type = 'nidm:NIDM_0000015', prov:label = "Coo
entity(niiri:coordinate_0001,[prov:type = 'nidm:NIDM_0000015', prov:label = "Coordinate: 0001", nidm:NIDM_0000086 = "[-60, -28, 13]" %% xsd:string])
entity(niiri:display_map_id,[prov:type = 'nidm:NIDM_0000020', prov:label = "Display Mask Map", prov:location = "file:///path/to/DisplayMask.nii.gz" %% xsd:anyURI, dct:format = "image/nifti" %% xsd:string, nfo:fileName = "DisplayMask.nii.gz" %% xsd:string, nidm:NIDM_0000104 = 'niiri:coordinate_space_id_2', crypto:sha512 = "e43b6e01b0463fe7d40782137867a..." %% xsd:string])
entity(niiri:coordinate_0002,[prov:type = 'nidm:NIDM_0000015', prov:label = "Coordinate: 0002", nidm:NIDM_0000086 = "[-66, -13, 4]" %% xsd:string])
entity(niiri:search_space_mask_id,[prov:type = 'nidm:NIDM_0000068', prov:label = "Search Space Mask Map", prov:location = "file:///path/to/SearchSpaceMask.nii.gz" %% xsd:anyURI, nfo:fileName = "SearchSpaceMask.nii.gz" %% xsd:string, dct:format = "image/nifti" %% xsd:string, nidm:NIDM_0000104 = 'niiri:coordinate_space_id_2', spm:expectedNumberOfVoxelsPerCluster = "0.553331387916112" %% xsd:float, spm:expectedNumberOfClusters = "0.0889172687960151" %% xsd:float, spm:heightCriticalThresholdFWE05 = "5.23529984739211" %% xsd:float, spm:heightCriticalThresholdFDR05 = "6.22537899017334" %% xsd:float, spm:smallestSignifClusterSizeInVoxelsFWE05 = "1" %% xsd:int, spm:smallestSignifClusterSizeInVoxelsFDR05 = "3" %% xsd:int, nidm:NIDM_0000121 = "65593" %% xsd:int, spm:searchVolumeInUnits = "1771011" %% xsd:float, spm:reselSize = "22.9229643140043" %% xsd:float, spm:searchVolumeInResels = "2552.68032521656" %% xsd:float, spm:searchVolumeReselsGeometry = "[3, 72.3216126440484, 850.716735116472, 2552.68032521656]" %% xsd:string, spm:noiseFWHMInVoxels = "[2.95881189165801, 2.96628446669584, 2.61180425626264]" %% xsd:string, spm:noiseFWHMInUnits = "[8.87643567497404, 8.89885340008753, 7.83541276878791]" %% xsd:string, nidm:NIDM_0000120 = "false" %% xsd:boolean, crypto:sha512 = "e43b6e01b0463fe7d40782137867a..." %% xsd:string])
entity(niiri:search_space_mask_id,[prov:type = 'nidm:NIDM_0000068', prov:label = "Search Space Mask Map", prov:location = "file:///path/to/SearchSpaceMask.nii.gz" %% xsd:anyURI, nfo:fileName = "SearchSpaceMask.nii.gz" %% xsd:string, dct:format = "image/nifti" %% xsd:string, nidm:NIDM_0000104 = 'niiri:coordinate_space_id_2', spm:expectedNumberOfVoxelsPerCluster = "0.553331387916112" %% xsd:float, spm:expectedNumberOfClusters = "0.0889172687960151" %% xsd:float, spm:heightCriticalThresholdFWE05 = "5.23529984739211" %% xsd:float, spm:heightCriticalThresholdFDR05 = "6.22537899017334" %% xsd:float, spm:smallestSignifClusterSizeInVoxelsFWE05 = "1" %% xsd:int, spm:smallestSignifClusterSizeInVoxelsFDR05 = "3" %% xsd:int, nidm:NIDM_0000121 = "65593" %% xsd:int, nidm:NIDM_0000136 = "1771011" %% xsd:float, spm:reselSize = "22.9229643140043" %% xsd:float, spm:searchVolumeInResels = "2552.68032521656" %% xsd:float, spm:searchVolumeReselsGeometry = "[3, 72.3216126440484, 850.716735116472, 2552.68032521656]" %% xsd:string, spm:noiseFWHMInVoxels = "[2.95881189165801, 2.96628446669584, 2.61180425626264]" %% xsd:string, spm:noiseFWHMInUnits = "[8.87643567497404, 8.89885340008753, 7.83541276878791]" %% xsd:string, nidm:NIDM_0000120 = "false" %% xsd:boolean, crypto:sha512 = "e43b6e01b0463fe7d40782137867a..." %% xsd:string])
entity(niiri:beta_map_id_2,[prov:type = 'nidm:NIDM_0000061', prov:label = "Beta Map 2", prov:location = "file:///path/to/ParameterEstimate_0002.nii" %% xsd:anyURI, nidm:NIDM_0000104 = 'niiri:coordinate_space_id_1', nfo:fileName = "ParameterEstimate_0002.nii.gz" %% xsd:string, dct:format = "image/nifti" %% xsd:string, crypto:sha512 = "e43b6e01b0463fe7d40782137867a..." %% xsd:string])
entity(niiri:coordinate_space_id_1,[prov:type = 'nidm:NIDM_0000016', prov:label = "Coordinate space 1", nidm:NIDM_0000132 = "[[-3, 0, 0, 78],[0, 3, 0, -112],[0, 0, 3, -50],[0, 0, 0, 1]]" %% xsd:string, nidm:NIDM_0000133 = "['mm', 'mm', 'mm']" %% xsd:string, nidm:NIDM_0000131 = "[3, 3, 3]" %% xsd:string, nidm:NIDM_0000105 = 'nidm:NIDM_0000051', nidm:NIDM_0000112 = "3" %% xsd:int, nidm:NIDM_0000090 = "[53,63,46]" %% xsd:string])
entity(niiri:residual_mean_squares_map_id,[prov:type = 'nidm:NIDM_0000066', prov:label = "Residual Mean Squares Map", prov:location = "file:///path/to/ResidualMeanSquares.nii.gz" %% xsd:anyURI, nfo:fileName = "ResidualMeanSquares.nii.gz" %% xsd:string, dct:format = "image/nifti" %% xsd:string, nidm:NIDM_0000104 = 'niiri:coordinate_space_id_1', crypto:sha512 = "e43b6e01b0463fe7d40782137867a..." %% xsd:string])
Expand Down
3 changes: 2 additions & 1 deletion nidm/nidm-results/spm/spm_results.ttl
View file
Expand Up @@ -86,6 +86,7 @@
@prefix nidm_softwareVersion: <http://purl.org/nidash/nidm#NIDM_0000122> .
@prefix nidm_SearchSpaceMaskMap: <http://purl.org/nidash/nidm#NIDM_0000068> .
@prefix nidm_searchVolumeInVoxels: <http://purl.org/nidash/nidm#NIDM_0000121> .
@prefix nidm_searchVolumeInUnits: <http://purl.org/nidash/nidm#NIDM_0000136> .
@prefix nidm_randomFieldStationarity: <http://purl.org/nidash/nidm#NIDM_0000120> .
@prefix nidm_SignificantCluster: <http://purl.org/nidash/nidm#NIDM_0000070> .
@prefix nidm_clusterLabelId: <http://purl.org/nidash/nidm#NIDM_0000082> .
Expand Down Expand Up @@ -541,7 +542,7 @@ niiri:search_space_mask_id a prov:Entity , nidm_SearchSpaceMaskMap: ;
spm:smallestSignifClusterSizeInVoxelsFWE05 "1"^^xsd:int ;
spm:smallestSignifClusterSizeInVoxelsFDR05 "3"^^xsd:int ;
nidm_searchVolumeInVoxels: "65593"^^xsd:int ;
spm:searchVolumeInUnits "1771011"^^xsd:float ;
nidm_searchVolumeInUnits: "1771011"^^xsd:float ;
spm:reselSize "22.9229643140043"^^xsd:float ;
spm:searchVolumeInResels "2552.68032521656"^^xsd:float ;
spm:searchVolumeReselsGeometry "[3, 72.3216126440484, 850.716735116472, 2552.68032521656]"^^xsd:string ;
Expand Down
14 changes: 7 additions & 7 deletions nidm/nidm-results/terms/README.md
View file
Expand Up @@ -624,6 +624,13 @@ Range: Vector of integers not found.<br/><a href="https://github.com/incf-nidash
<td>nidm:NIDM_0000068 </td>
<td>xsd:boolean </td>
</tr>
<tr>
<td><img src="../../../doc/content/specs/img/orange.png?raw=true"/> </td>
<td><a href="https://github.com/incf-nidash/nidm//issues?&q='search Volume In Vertices'"> [find issues/PR] </a></td>
<td><b>nidm:'search Volume In Vertices': </b>Total number of vertices within the search volume</td>
<td>nidm:NIDM_0000068 </td>
<td></td>
</tr>
<tr>
<td><img src="../../../doc/content/specs/img/orange.png?raw=true"/> </td>
<td><a href="https://github.com/incf-nidash/nidm//issues?&q=expectedNumberOfVerticesPerCluster"> [find issues/PR] </a></td>
Expand Down Expand Up @@ -673,13 +680,6 @@ Range: Vector of integers not found.<br/><a href="https://github.com/incf-nidash
<td>nidm:NIDM_0000068 </td>
<td></td>
</tr>
<tr>
<td><img src="../../../doc/content/specs/img/orange.png?raw=true"/> </td>
<td><a href="https://github.com/incf-nidash/nidm//issues?&q=searchVolumeInVertices"> [find issues/PR] </a></td>
<td><b>spm:searchVolumeInVertices: </b>Total number of vertices within the search volume</td>
<td>nidm:NIDM_0000068 </td>
<td></td>
</tr>
<tr>
<td><img src="../../../doc/content/specs/img/orange.png?raw=true"/> </td>
<td>Under discussion at <a href="https://github.com/incf-nidash/nidm/pull/291">#291</a><br/><a href="https://github.com/incf-nidash/nidm//issues?&q=softwareRevision"> [more] </a></td>
Expand Down

0 comments on commit 6b63819

Please sign in to comment.