[Docker] error running the image

[mso1830]

The log of running the image is as follow ( tried it with automatic and manual(5555) ports):

[#######:~]$ docker run -P --rm -it informagi/rel:2019 2020-08-25 03:18:22,260 https://s3.eu-central-1.amazonaws.com/alan-nlp/resources/models-v0.4/NER-conll03--h256-l1-b32-p3-0.5-%2Bglove%2Bnews-forward-fast%2Bnews-backward-fast-normal-locked0.5-word0.05--release_4/en-ner-fast-conll03-v0.4.pt not found in cache, downloading to /tmp/tmphlgzrwlk 100%|██████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████| 256774339/256774339 [00:12<00:00, 20665722.77B/s] 2020-08-25 03:18:35,239 copying /tmp/tmphlgzrwlk to cache at /root/.flair/models/en-ner-fast-conll03-v0.4.pt 2020-08-25 03:18:35,458 removing temp file /tmp/tmphlgzrwlk 2020-08-25 03:18:35,493 loading file /root/.flair/models/en-ner-fast-conll03-v0.4.pt 2020-08-25 03:18:37,523 http://gem.cs.ru.nl/ed-wiki-2019.tar.gz not found in cache, downloading to /tmp/tmpeqim6x5s 100%|███████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████████| 1019959/1019959 [00:00<00:00, 1610233.38B/s] 2020-08-25 03:18:38,400 copying /tmp/tmpeqim6x5s to cache at /root/.rel_cache/ed-wiki-2019.tar.gz 2020-08-25 03:18:38,403 removing temp file /tmp/tmpeqim6x5s Traceback (most recent call last): File "/opt/conda/lib/python3.7/runpy.py", line 193, in _run_module_as_main "__main__", mod_spec) File "/opt/conda/lib/python3.7/runpy.py", line 85, in _run_code exec(code, run_globals) File "/workspace/REL/REL/server.py", line 163, in <module> args.base_url, args.wiki_version, {"mode": "eval", "model_path": args.ed_model} File "/workspace/REL/REL/entity_disambiguation.py", line 47, in __init__ "entity_word_embedding", "{}/{}/generated/".format(base_url, wiki_version), File "/workspace/REL/REL/db/generic.py", line 35, in __init__ self.db = self.initialize_db(path_db, table_name, columns) File "/workspace/REL/REL/db/base.py", line 41, in initialize_db db = sqlite3.connect(fname, isolation_level=None) sqlite3.OperationalError: unable to open database file

[KDercksen]

Hi mso1830, thanks for reporting this issue!

It looks like the tar archive containing the wiki 2019 files got corrupted somehow. I'm currently rebuilding it, I will update you once it's working again!

[arjenpdevries]

Could it be that the files download but do not fit in the space allocated to the container?

Maybe you can use a mount point for the flair download - useful when the user has multiple images to play with, those can share the data in this mountpoint. Since you run with --rm here, you'd download it again and again.

Because some of the errors relate to data in /tmp, you could also consider using a tmpfs mount (but is linux only).

[KDercksen]

This is fixed for now, the instructions on using Docker have been updated accordingly. I'm closing this issue, if you run into further issues please let us know!