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  1. hisat2

    Graph-based alignment (Hierarchical Graph FM index)

    C++ 100 25

  2. tophat

    Spliced read mapper for RNA-Seq

    C++ 59 24

  3. centrifuge

    Classifier for metagenomic sequences

    C++ 36 9

  4. hisat

    Fast spliced aligner with low memory requirements

    C++ 28 13

  5. tophat2

    tophat2 is exactly the same source as tophat (just naming convention), so please use tophat (https://github.com/infphilo/tophat)

    1 2

  6. hisatgenotype_db

    HISAT-genotype's database for human genes

    1

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