index.rst

CONCOCT Scripts

The scripts in the CONCOCT/scripts directory are not fully maintained. They implement methods that we apply after binning with CONCOCT. Eventually some of these methods might make it to a package of their own.

To test all scripts that have tests one could do:

cd CONCOCT/scripts/tests
nosetests

Before using a script it would be good to check if its test (in case it has one) is working for you:

cd CONCOCT/scripts/tests
nosetests -s test_script_name

Contents:

dnadiff_dist_matrix extract_scg_bins