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@walkowif
walkowif committed Dec 12, 2023
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18 changes: 9 additions & 9 deletions main/coverage-report/index.html
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<head>
<meta charset="utf-8"/>
<style>body{background-color:white;}</style>
<script src="lib/htmlwidgets-1.6.2/htmlwidgets.js"></script>
<script src="lib/htmlwidgets-1.6.4/htmlwidgets.js"></script>
<link href="lib/datatables-css-0.0.0/datatables-crosstalk.css" rel="stylesheet" />
<script src="lib/datatables-binding-0.28/datatables.js"></script>
<script src="lib/datatables-binding-0.31/datatables.js"></script>
<script src="lib/jquery-3.6.0/jquery-3.6.0.min.js"></script>
<link href="lib/dt-core-1.13.4/css/jquery.dataTables.min.css" rel="stylesheet" />
<link href="lib/dt-core-1.13.4/css/jquery.dataTables.extra.css" rel="stylesheet" />
<script src="lib/dt-core-1.13.4/js/jquery.dataTables.min.js"></script>
<link href="lib/crosstalk-1.2.0/css/crosstalk.min.css" rel="stylesheet" />
<script src="lib/crosstalk-1.2.0/js/crosstalk.min.js"></script>
<link href="lib/dt-core-1.13.6/css/jquery.dataTables.min.css" rel="stylesheet" />
<link href="lib/dt-core-1.13.6/css/jquery.dataTables.extra.css" rel="stylesheet" />
<script src="lib/dt-core-1.13.6/js/jquery.dataTables.min.js"></script>
<link href="lib/crosstalk-1.2.1/css/crosstalk.min.css" rel="stylesheet" />
<script src="lib/crosstalk-1.2.1/js/crosstalk.min.js"></script>
<link href="lib/highlight.js-6.2/rstudio.css" rel="stylesheet" />
<script src="lib/highlight.js-6.2/highlight.pack.js"></script>
<meta name="viewport" content="width=device-width, initial-scale=1" />
Expand Down Expand Up @@ -106,8 +106,8 @@ <h2>hermes coverage - 88.85%</h2>
</ul>
<div class="tab-content" data-tabsetid="covr">
<div class="tab-pane active" title="Files" data-value="Files" id="tab-covr-1">
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<div class="datatables html-widget html-fill-item" id="htmlwidget-d91b024fe5fd716f5b5f" style="width:100%;height:500px;"></div>
<script type="application/json" data-for="htmlwidget-d91b024fe5fd716f5b5f">{"x":{"filter":"none","vertical":false,"fillContainer":false,"data":[["<a href=\"#\">R/connections.R<\/a>","<a href=\"#\">R/dplyr_compatibility.R<\/a>","<a href=\"#\">R/draw_scatterplot.R<\/a>","<a href=\"#\">R/HermesData-class.R<\/a>","<a href=\"#\">R/draw_boxplot.R<\/a>","<a href=\"#\">R/assertthat.R<\/a>","<a href=\"#\">R/quality.R<\/a>","<a href=\"#\">R/differential.R<\/a>","<a href=\"#\">R/draw_heatmap.R<\/a>","<a href=\"#\">R/graphs.R<\/a>","<a href=\"#\">R/normalization.R<\/a>","<a href=\"#\">R/HermesData-methods.R<\/a>","<a href=\"#\">R/utils.R<\/a>","<a href=\"#\">R/GeneSpec-class.R<\/a>","<a href=\"#\">R/pca_cor_samplevar.R<\/a>","<a href=\"#\">R/HermesData-validate.R<\/a>","<a href=\"#\">R/top_genes.R<\/a>","<a href=\"#\">R/draw_barplot.R<\/a>","<a href=\"#\">R/join_cdisc.R<\/a>","<a href=\"#\">R/pca.R<\/a>","<a href=\"#\">R/calc_cor.R<\/a>","<a href=\"#\">R/checkmate.R<\/a>"],[383,38,96,168,159,151,270,297,82,272,275,939,393,211,243,122,141,97,103,95,120,59],[119,3,31,27,60,19,67,87,31,95,83,166,90,61,53,44,43,33,33,23,20,4],[15,2,27,24,55,18,64,84,30,92,81,166,90,61,53,44,43,33,33,23,20,4],[104,1,4,3,5,1,3,3,1,3,2,0,0,0,0,0,0,0,0,0,0,0],["0","1","1","48","1","186","10","5","1","3","24","5","12","19","67","73","10","1","3","9","4","47"],["12.61%","66.67%","87.10%","88.89%","91.67%","94.74%","95.52%","96.55%","96.77%","96.84%","97.59%","100.00%","100.00%","100.00%","100.00%","100.00%","100.00%","100.00%","100.00%","100.00%","100.00%","100.00%"]],"container":"<table class=\"row-border\">\n <thead>\n <tr>\n <th>File<\/th>\n <th>Lines<\/th>\n <th>Relevant<\/th>\n <th>Covered<\/th>\n <th>Missed<\/th>\n <th>Hits / Line<\/th>\n <th>Coverage<\/th>\n <\/tr>\n <\/thead>\n<\/table>","options":{"searching":false,"dom":"t","paging":false,"columnDefs":[{"targets":6,"createdCell":"function(td, cellData, rowData, row, col) {\n var percent = cellData.replace(\"%\", \"\");\n if (percent > 90) {\n var grad = \"linear-gradient(90deg, #edfde7 \" + cellData + \", white \" + cellData + \")\";\n } else if (percent > 75) {\n var grad = \"linear-gradient(90deg, #f9ffe5 \" + cellData + \", white \" + cellData + \")\";\n } else {\n var grad = \"linear-gradient(90deg, #fcece9 \" + cellData + \", white \" + cellData + \")\";\n }\n $(td).css(\"background\", grad);\n}\n"},{"className":"dt-right","targets":[1,2,3,4]},{"name":"File","targets":0},{"name":"Lines","targets":1},{"name":"Relevant","targets":2},{"name":"Covered","targets":3},{"name":"Missed","targets":4},{"name":"Hits / Line","targets":5},{"name":"Coverage","targets":6}],"order":[],"autoWidth":false,"orderClasses":false},"callback":"function(table) {\ntable.on('click.dt', 'a', function() {\n files = $('div#files div');\n files.not('div.hidden').addClass('hidden');\n id = $(this).text();\n files.filter('div[id=\\'' + id + '\\']').removeClass('hidden');\n $('ul.nav a[data-value=Source]').text(id).tab('show');\n});\n}"},"evals":["options.columnDefs.0.createdCell","callback"],"jsHooks":[]}</script>
</div>
<div class="tab-pane" title="Source" data-value="Source" id="tab-covr-2">
<div id="files">
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16 changes: 10 additions & 6 deletions ...lib/datatables-binding-0.28/datatables.js → ...lib/datatables-binding-0.31/datatables.js
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Expand Up @@ -2,7 +2,7 @@

// some helper functions: using a global object DTWidget so that it can be used
// in JS() code, e.g. datatable(options = list(foo = JS('code'))); unlike R's
// dynamic scoping, when 'code' is eval()'ed, JavaScript does not know objects
// dynamic scoping, when 'code' is eval'ed, JavaScript does not know objects
// from the "parent frame", e.g. JS('DTWidget') will not work unless it was made
// a global object
var DTWidget = {};
Expand Down Expand Up @@ -432,6 +432,8 @@ HTMLWidgets.widget({
regex = options.search.regex,
ci = options.search.caseInsensitive !== false;
}
// need to transpose the column index when colReorder is enabled
if (table.colReorder) i = table.colReorder.transpose(i);
return table.column(i).search(value, regex, !regex, ci);
};

Expand Down Expand Up @@ -493,7 +495,9 @@ HTMLWidgets.widget({
$input.parent().hide(); $x.show().trigger('show'); filter[0].selectize.focus();
},
input: function() {
if ($input.val() === '') filter[0].selectize.setValue([]);
var v1 = JSON.stringify(filter[0].selectize.getValue()), v2 = $input.val();
if (v1 === '[]') v1 = '';
if (v1 !== v2) filter[0].selectize.setValue(v2 === '' ? [] : JSON.parse(v2));
}
});
var $input2 = $x.children('select');
Expand All @@ -509,7 +513,7 @@ HTMLWidgets.widget({
if (value.length) $input.trigger('input');
$input.attr('title', $input.val());
if (server) {
table.column(i).search(value.length ? JSON.stringify(value) : '').draw();
searchColumn(i, value.length ? JSON.stringify(value) : '').draw();
return;
}
// turn off filter if nothing selected
Expand Down Expand Up @@ -680,7 +684,7 @@ HTMLWidgets.widget({
updateSliderText(val[0], val[1]);
if (e.type === 'slide') return; // no searching when sliding only
if (server) {
table.column(i).search($td.data('filter') ? ival : '').draw();
searchColumn(i, $td.data('filter') ? ival : '').draw();
return;
}
table.draw();
Expand Down Expand Up @@ -1370,7 +1374,7 @@ HTMLWidgets.widget({
changeInput('cell_clicked', {});

// do not trigger table selection when clicking on links unless they have classes
table.on('click.dt', 'tbody td a', function(e) {
table.on('mousedown.dt', 'tbody td a', function(e) {
if (this.className === '') e.stopPropagation();
});

Expand Down Expand Up @@ -1398,7 +1402,7 @@ HTMLWidgets.widget({
console.log('The search keyword for column ' + i + ' is undefined')
return;
}
$(td).find('input').first().val(v);
$(td).find('input').first().val(v).trigger('input');
searchColumn(i, v);
});
table.draw();
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1 change: 0 additions & 1 deletion main/coverage-report/lib/dt-core-1.13.4/css/jquery.dataTables.min.css
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